(89 nodes) RNA-binding domain superfamily network (Neolentinus lepideus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A165RDY9	RRM domain-containing protein. (239 aa)
	A0A165RNL8	Uncharacterized protein. (296 aa)
	A0A165RST6	RRM domain-containing protein. (196 aa)
	A0A165RSU7	RRM domain-containing protein. (213 aa)
	A0A165S9S2	RNA-binding domain-containing protein. (392 aa)
	A0A165SB29	RRM domain-containing protein. (333 aa)
	A0A165SDL3	RNA-binding domain-containing protein. (168 aa)
	A0A165SNF0	RRM domain-containing protein. (473 aa)
	A0A165ST57	RNA-binding domain-containing protein. (246 aa)
	A0A165SVS6	Uncharacterized protein. (486 aa)
	A0A165SVZ2	RRM domain-containing protein. (210 aa)
	A0A165SW34	Uncharacterized protein. (795 aa)
	A0A165T7R8	Uncharacterized protein. (227 aa)
	A0A165T7S3	Nuclear cap-binding protein subunit 2. (225 aa)
	A0A165T959	Uncharacterized protein. (542 aa)
	A0A165TA31	RNA-binding domain-containing protein. (153 aa)
	A0A165TB25	Pre-mRNA-splicing factor SLT11. (327 aa)
	A0A165TE18	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (687 aa)
	A0A165TGS7	RNA-binding domain-containing protein. (183 aa)
	A0A165TIL6	Uncharacterized protein. (724 aa)
	A0A165TKD2	RNA-binding domain-containing protein. (150 aa)
	A0A165TL83	RRM domain-containing protein. (432 aa)
	A0A165TN45	Uncharacterized protein. (202 aa)
	A0A165TN95	RNA-binding domain-containing protein. (191 aa)
	A0A165TP83	RRM domain-containing protein. (216 aa)
	A0A165TPH9	RNA-binding domain-containing protein. (336 aa)
	A0A165TY98	Uncharacterized protein. (1037 aa)
	A0A165U2S5	RRM domain-containing protein. (636 aa)
	A0A165U4C2	RNA-binding domain-containing protein. (239 aa)
	A0A165U8Q0	RRM Nup35-type domain-containing protein. (339 aa)
	A0A165UAG1	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (483 aa)
	A0A165UAL3	Uncharacterized protein. (860 aa)
	A0A165UGH9	RING-type domain-containing protein. (705 aa)
	A0A165UHL1	Uncharacterized protein. (1093 aa)
	A0A165UII7	Smg4_UPF3 domain-containing protein. (437 aa)
	A0A165UQH0	Uncharacterized protein. (1286 aa)
	A0A165URZ4	Uncharacterized protein. (730 aa)
	A0A165UTB6	RING-type domain-containing protein. (1399 aa)
	A0A165UTE8	Uncharacterized protein. (676 aa)
	A0A165UTW5	Uncharacterized protein. (624 aa)
	A0A165V0A0	RNA-binding domain-containing protein. (250 aa)
	A0A165V7C7	RNA-binding domain-containing protein. (123 aa)
	A0A165V883	RNA-binding domain-containing protein. (249 aa)
	A0A165VAR6	RRM domain-containing protein. (309 aa)
	A0A165VAX8	RRM domain-containing protein. (991 aa)
	A0A165VB49	Uncharacterized protein. (465 aa)
	A0A165VB81	Uncharacterized protein. (315 aa)
	A0A165VBM8	Uncharacterized protein. (941 aa)
	A0A165VCI9	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (411 aa)
	A0A165VN38	RRM domain-containing protein. (186 aa)
	PRT1	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family. (745 aa)
	A0A165W1W6	Splicing factor, CC1-like protein. (461 aa)
	A0A165W6D9	RRM domain-containing protein. (323 aa)
	A0A165W9C3	Uncharacterized protein. (1121 aa)
	A0A165MT76	RNA-binding domain-containing protein. (918 aa)
	A0A165MVN8	Calcipressin. (260 aa)
	A0A165N1I6	Uncharacterized protein. (485 aa)
	A0A165N6P7	RRM domain-containing protein. (480 aa)
	A0A165N766	RNA-binding domain-containing protein. (183 aa)
	A0A165N843	RRM domain-containing protein. (279 aa)
	A0A165N9G3	RNA-binding domain-containing protein. (138 aa)
	A0A165NFI2	Uncharacterized protein. (762 aa)
	A0A165NN69	Winged helix DNA-binding domain-containing protein. (296 aa)
	A0A165NN75	Uncharacterized protein. (485 aa)
	A0A165NQT2	Uncharacterized protein. (836 aa)
	A0A165NRK4	RRM domain-containing protein. (261 aa)
	A0A165P2H3	RRM domain-containing protein. (358 aa)
	A0A165P748	RRM domain-containing protein. (700 aa)
	A0A165P7A8	RNA-binding domain-containing protein. (310 aa)
	A0A165P805	Uncharacterized protein. (236 aa)
	A0A165P8E7	RNA-binding domain-containing protein. (117 aa)
	A0A165PK62	RRM domain-containing protein. (549 aa)
	A0A165PLB0	Y14 protein. (152 aa)
	A0A165PYW3	Uncharacterized protein. (421 aa)
	A0A165PZ92	Uncharacterized protein. (824 aa)
	A0A165Q711	RNA-binding domain-containing protein. (199 aa)
	A0A165QA55	Uncharacterized protein. (491 aa)
	A0A165QE35	Uncharacterized protein. (1418 aa)
	A0A165QEC1	RRM domain-containing protein. (374 aa)
	A0A165QJA4	Uncharacterized protein. (674 aa)
	A0A165QME8	RNA-binding domain-containing protein. (270 aa)
	A0A165QPV9	Translation initiation factor eIF3g. (293 aa)
	A0A165QQ93	Uncharacterized protein. (850 aa)
	A0A165QWT3	RRM domain-containing protein. (191 aa)
	A0A165R1S3	RNA-binding domain-containing protein. (342 aa)
	A0A165R403	Uncharacterized protein. (378 aa)
	A0A165RB47	RRM domain-containing protein. (276 aa)
	A0A165RC84	RRM domain-containing protein. (130 aa)
	A0A165RD20	Uncharacterized protein. (500 aa)

Your Current Organism:

Neolentinus lepideus

NCBI taxonomy Id: 1314782
Other names: N. lepideus HHB14362 ss-1, Neolentinus lepideus HHB14362 ss-1

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A165MT76	A0A165N6P7	A0A165MT76	A0A165N6P7	RNA-binding domain-containing protein.	RRM domain-containing protein.	0.416
A0A165MT76	A0A165NFI2	A0A165MT76	A0A165NFI2	RNA-binding domain-containing protein.	Uncharacterized protein.	0.917
A0A165MT76	A0A165NN69	A0A165MT76	A0A165NN69	RNA-binding domain-containing protein.	Winged helix DNA-binding domain-containing protein.	0.626
A0A165MT76	A0A165NN75	A0A165MT76	A0A165NN75	RNA-binding domain-containing protein.	Uncharacterized protein.	0.626
A0A165MT76	A0A165P7A8	A0A165MT76	A0A165P7A8	RNA-binding domain-containing protein.	RNA-binding domain-containing protein.	0.796
A0A165MT76	A0A165P805	A0A165MT76	A0A165P805	RNA-binding domain-containing protein.	Uncharacterized protein.	0.572
A0A165MT76	A0A165P8E7	A0A165MT76	A0A165P8E7	RNA-binding domain-containing protein.	RNA-binding domain-containing protein.	0.508
A0A165MT76	A0A165Q711	A0A165MT76	A0A165Q711	RNA-binding domain-containing protein.	RNA-binding domain-containing protein.	0.986
A0A165MT76	A0A165SDL3	A0A165MT76	A0A165SDL3	RNA-binding domain-containing protein.	RNA-binding domain-containing protein.	0.472
A0A165MT76	A0A165SNF0	A0A165MT76	A0A165SNF0	RNA-binding domain-containing protein.	RRM domain-containing protein.	0.976
A0A165MT76	A0A165TKD2	A0A165MT76	A0A165TKD2	RNA-binding domain-containing protein.	RNA-binding domain-containing protein.	0.431
A0A165MT76	A0A165TN45	A0A165MT76	A0A165TN45	RNA-binding domain-containing protein.	Uncharacterized protein.	0.472
A0A165MT76	A0A165TY98	A0A165MT76	A0A165TY98	RNA-binding domain-containing protein.	Uncharacterized protein.	0.437
A0A165MT76	A0A165VB49	A0A165MT76	A0A165VB49	RNA-binding domain-containing protein.	Uncharacterized protein.	0.881
A0A165MT76	A0A165VB81	A0A165MT76	A0A165VB81	RNA-binding domain-containing protein.	Uncharacterized protein.	0.641
A0A165MT76	A0A165W6D9	A0A165MT76	A0A165W6D9	RNA-binding domain-containing protein.	RRM domain-containing protein.	0.844
A0A165N6P7	A0A165MT76	A0A165N6P7	A0A165MT76	RRM domain-containing protein.	RNA-binding domain-containing protein.	0.416
A0A165N6P7	A0A165PLB0	A0A165N6P7	A0A165PLB0	RRM domain-containing protein.	Y14 protein.	0.471
A0A165N6P7	A0A165QEC1	A0A165N6P7	A0A165QEC1	RRM domain-containing protein.	RRM domain-containing protein.	0.677
A0A165N6P7	A0A165QME8	A0A165N6P7	A0A165QME8	RRM domain-containing protein.	RNA-binding domain-containing protein.	0.744