(17 nodes) Sm domain network (Neolentinus lepideus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A165V0I5	Small nuclear ribonucleoprotein Sm D3. (143 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (117 aa)
	A0A165UCT2	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	A0A165U7X4	Sm-like ribonucleo protein. (176 aa)
	A0A165TNF3	Small nuclear ribonucleo protein SmF. (80 aa)
	A0A165S5M1	Sm domain-containing protein. (88 aa)
	A0A165RUP8	Sm-like ribonucleo protein. (100 aa)
	A0A165RLG5	Uncharacterized protein. (362 aa)
	A0A165RHE9	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (87 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
	A0A165QY40	U6 snRNA-associated Sm-like protein LSm7. (138 aa)
	A0A165PXS3	Small nuclear ribonucleoprotein Sm D2. (124 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (146 aa)
	A0A165PAJ8	Small nuclear ribonucleoprotein G. (77 aa)
	A0A165NQB9	AA_TRNA_LIGASE_II domain-containing protein. (1633 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (136 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (84 aa)

Your Current Organism:

Neolentinus lepideus

NCBI taxonomy Id: 1314782
Other names: N. lepideus HHB14362 ss-1, Neolentinus lepideus HHB14362 ss-1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A165PAJ8	A0A165PXS3	A0A165PAJ8	A0A165PXS3	Small nuclear ribonucleoprotein G.	Small nuclear ribonucleoprotein Sm D2.	0.999
A0A165PAJ8	A0A165QY40	A0A165PAJ8	A0A165QY40	Small nuclear ribonucleoprotein G.	U6 snRNA-associated Sm-like protein LSm7.	0.979
A0A165PAJ8	A0A165RHE9	A0A165PAJ8	A0A165RHE9	Small nuclear ribonucleoprotein G.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
A0A165PAJ8	A0A165RUP8	A0A165PAJ8	A0A165RUP8	Small nuclear ribonucleoprotein G.	Sm-like ribonucleo protein.	0.989
A0A165PAJ8	A0A165S5M1	A0A165PAJ8	A0A165S5M1	Small nuclear ribonucleoprotein G.	Sm domain-containing protein.	0.942
A0A165PAJ8	A0A165TNF3	A0A165PAJ8	A0A165TNF3	Small nuclear ribonucleoprotein G.	Small nuclear ribonucleo protein SmF.	0.999
A0A165PAJ8	A0A165U7X4	A0A165PAJ8	A0A165U7X4	Small nuclear ribonucleoprotein G.	Sm-like ribonucleo protein.	0.998
A0A165PAJ8	A0A165UCT2	A0A165PAJ8	A0A165UCT2	Small nuclear ribonucleoprotein G.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.984
A0A165PAJ8	A0A165V0I5	A0A165PAJ8	A0A165V0I5	Small nuclear ribonucleoprotein G.	Small nuclear ribonucleoprotein Sm D3.	0.999
A0A165PAJ8	LSM1	A0A165PAJ8	A0A165VZ81	Small nuclear ribonucleoprotein G.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.546
A0A165PAJ8	LSM3	A0A165PAJ8	A0A165V7Z5	Small nuclear ribonucleoprotein G.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.990
A0A165PAJ8	LSM4	A0A165PAJ8	A0A165PIY9	Small nuclear ribonucleoprotein G.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.972
A0A165PAJ8	LSM5	A0A165PAJ8	A0A165W3I0	Small nuclear ribonucleoprotein G.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.987
A0A165PAJ8	LSM8	A0A165PAJ8	A0A165REF4	Small nuclear ribonucleoprotein G.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.991
A0A165PXS3	A0A165PAJ8	A0A165PXS3	A0A165PAJ8	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein G.	0.999
A0A165PXS3	A0A165QY40	A0A165PXS3	A0A165QY40	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm7.	0.995
A0A165PXS3	A0A165RHE9	A0A165PXS3	A0A165RHE9	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
A0A165PXS3	A0A165RUP8	A0A165PXS3	A0A165RUP8	Small nuclear ribonucleoprotein Sm D2.	Sm-like ribonucleo protein.	0.994
A0A165PXS3	A0A165S5M1	A0A165PXS3	A0A165S5M1	Small nuclear ribonucleoprotein Sm D2.	Sm domain-containing protein.	0.979
A0A165PXS3	A0A165TNF3	A0A165PXS3	A0A165TNF3	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleo protein SmF.	0.999