(45 nodes) Endosomal Sorting Complex Required For Transport (ESCRT), and BRO1 domain network (Rhizopogon vinicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1B7MK17	Uncharacterized protein. (243 aa)
	A0A1B7MK18	Uncharacterized protein. (108 aa)
	A0A1B7MKU2	Uncharacterized protein. (350 aa)
	A0A1B7MKW5	VPS37 C-terminal domain-containing protein. (214 aa)
	A0A1B7ML14	Magnesium-dependent phosphatase-1. (194 aa)
	A0A1B7ML18	EF-hand. (208 aa)
	A0A1B7ML41	Uncharacterized protein. (414 aa)
	A0A1B7ML55	Uncharacterized protein. (438 aa)
	A0A1B7MMT7	Snf7-domain-containing protein. (219 aa)
	A0A1B7MNA1	Uncharacterized protein. (98 aa)
	A0A1B7MNA5	Winged helix DNA-binding domain-containing protein. (182 aa)
	A0A1B7MNB2	Uncharacterized protein. (102 aa)
	A0A1B7MPE3	Winged helix DNA-binding domain-containing protein. (94 aa)
	A0A1B7MPU3	VHS domain-containing protein. (497 aa)
	A0A1B7MU93	Vacuolar sorting protein VPS24. (216 aa)
	A0A1B7MUM9	Mov34-domain-containing protein. (690 aa)
	A0A1B7MUT7	ESCRT-II complex vps25 subunit. (191 aa)
	A0A1B7MUW2	Uncharacterized protein. (92 aa)
	A0A1B7MVV0	Acid protease; Belongs to the peptidase A1 family. (404 aa)
	A0A1B7MZQ2	GLUE N-terminal domain-containing protein. (611 aa)
	A0A1B7N0D4	Vacuolar protein sorting-associated protein 28; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. (215 aa)
	A0A1B7N0K1	Pali-domain-containing protein. (544 aa)
	A0A1B7N160	AAA domain-containing protein. (684 aa)
	A0A1B7N251	Uncharacterized protein. (462 aa)
	A0A1B7N285	Uncharacterized protein. (332 aa)
	A0A1B7N4K2	BRO1 domain-containing protein. (457 aa)
	A0A1B7N5N1	Uncharacterized protein. (67 aa)
	A0A1B7N649	Cysteine proteinase; Belongs to the peptidase C19 family. (1162 aa)
	A0A1B7N661	Uncharacterized protein. (159 aa)
	A0A1B7N6J8	Vacuolar protein sorting-associated protein 27; Component of the ESCRT-0 complex which is the sorting receptor for ubiquitinated cargo proteins at the multivesicular body (MVB) and recruits ESCRT-I to the MVB outer membrane. (700 aa)
	A0A1B7N6M2	AAA-domain-containing protein; Belongs to the AAA ATPase family. (436 aa)
	A0A1B7N7I1	Snf7-domain-containing protein. (243 aa)
	A0A1B7NBD1	DUF292-domain-containing protein. (240 aa)
	A0A1B7NBI5	BRO1-domain-containing protein. (958 aa)
	A0A1B7ND63	Cysteine proteinase; Belongs to the peptidase C2 family. (790 aa)
	A0A1B7NDA6	VPS37 C-terminal domain-containing protein. (181 aa)
	A0A1B7NDS1	DUF605-domain-containing protein. (477 aa)
	A0A1B7NE27	BRO1-domain-containing protein. (772 aa)
	A0A1B7NED5	Winged helix DNA-binding domain-containing protein. (248 aa)
	A0A1B7NGC6	Uncharacterized protein. (203 aa)
	A0A1B7NGN0	Uncharacterized protein. (213 aa)
	A0A1B7NH18	Snf7-domain-containing protein. (225 aa)
	A0A1B7NHS5	Uncharacterized protein. (711 aa)
	A0A1B7NI79	UEV-domain-containing protein. (518 aa)
	A0A1B7NIK8	Uncharacterized protein. (782 aa)

Your Current Organism:

Rhizopogon vinicolor

NCBI taxonomy Id: 1314800
Other names: R. vinicolor AM-OR11-026, Rhizopogon vinicolor AM-OR11-026

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1B7MK17	A0A1B7MKU2	Uncharacterized protein.	Uncharacterized protein.	0.593
A0A1B7MK17	A0A1B7MKW5	Uncharacterized protein.	VPS37 C-terminal domain-containing protein.	0.764
A0A1B7MK17	A0A1B7ML41	Uncharacterized protein.	Uncharacterized protein.	0.596
A0A1B7MK17	A0A1B7MMT7	Uncharacterized protein.	Snf7-domain-containing protein.	0.826
A0A1B7MK17	A0A1B7MPU3	Uncharacterized protein.	VHS domain-containing protein.	0.548
A0A1B7MK17	A0A1B7MU93	Uncharacterized protein.	Vacuolar sorting protein VPS24.	0.613
A0A1B7MK17	A0A1B7MZQ2	Uncharacterized protein.	GLUE N-terminal domain-containing protein.	0.949
A0A1B7MK17	A0A1B7N0D4	Uncharacterized protein.	Vacuolar protein sorting-associated protein 28; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	0.933
A0A1B7MK17	A0A1B7N251	Uncharacterized protein.	Uncharacterized protein.	0.622
A0A1B7MK17	A0A1B7N285	Uncharacterized protein.	Uncharacterized protein.	0.616
A0A1B7MK17	A0A1B7N6J8	Uncharacterized protein.	Vacuolar protein sorting-associated protein 27; Component of the ESCRT-0 complex which is the sorting receptor for ubiquitinated cargo proteins at the multivesicular body (MVB) and recruits ESCRT-I to the MVB outer membrane.	0.643
A0A1B7MK17	A0A1B7N7I1	Uncharacterized protein.	Snf7-domain-containing protein.	0.777
A0A1B7MK17	A0A1B7NDA6	Uncharacterized protein.	VPS37 C-terminal domain-containing protein.	0.764
A0A1B7MK17	A0A1B7NED5	Uncharacterized protein.	Winged helix DNA-binding domain-containing protein.	0.951
A0A1B7MK17	A0A1B7NH18	Uncharacterized protein.	Snf7-domain-containing protein.	0.913
A0A1B7MK17	A0A1B7NHS5	Uncharacterized protein.	Uncharacterized protein.	0.467
A0A1B7MK17	A0A1B7NI79	Uncharacterized protein.	UEV-domain-containing protein.	0.687
A0A1B7MK18	A0A1B7MKU2	Uncharacterized protein.	Uncharacterized protein.	0.593
A0A1B7MK18	A0A1B7MKW5	Uncharacterized protein.	VPS37 C-terminal domain-containing protein.	0.646
A0A1B7MK18	A0A1B7ML41	Uncharacterized protein.	Uncharacterized protein.	0.596