(5 nodes) Mixed, incl. Tetratricopeptide repeat, and Mycotoxin metabolic process network (Rhizopogon vinicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1B7MF05	Uncharacterized protein. (528 aa)
	A0A1B7MQ32	Uncharacterized protein. (513 aa)
	A0A1B7MXD9	Uncharacterized protein. (125 aa)
	A0A1B7N4Z8	TPR-like protein. (228 aa)
	A0A1B7NHD5	Uncharacterized protein. (265 aa)

Your Current Organism:

Rhizopogon vinicolor

NCBI taxonomy Id: 1314800
Other names: R. vinicolor AM-OR11-026, Rhizopogon vinicolor AM-OR11-026

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1B7MF05	A0A1B7MQ32	Uncharacterized protein.	Uncharacterized protein.	0.728
A0A1B7MF05	A0A1B7MXD9	Uncharacterized protein.	Uncharacterized protein.	0.715
A0A1B7MF05	A0A1B7N4Z8	Uncharacterized protein.	TPR-like protein.	0.562
A0A1B7MF05	A0A1B7NHD5	Uncharacterized protein.	Uncharacterized protein.	0.657
A0A1B7MQ32	A0A1B7MF05	Uncharacterized protein.	Uncharacterized protein.	0.728
A0A1B7MQ32	A0A1B7MXD9	Uncharacterized protein.	Uncharacterized protein.	0.798
A0A1B7MQ32	A0A1B7N4Z8	Uncharacterized protein.	TPR-like protein.	0.761
A0A1B7MQ32	A0A1B7NHD5	Uncharacterized protein.	Uncharacterized protein.	0.707
A0A1B7MXD9	A0A1B7MF05	Uncharacterized protein.	Uncharacterized protein.	0.715
A0A1B7MXD9	A0A1B7MQ32	Uncharacterized protein.	Uncharacterized protein.	0.798
A0A1B7MXD9	A0A1B7N4Z8	Uncharacterized protein.	TPR-like protein.	0.851
A0A1B7MXD9	A0A1B7NHD5	Uncharacterized protein.	Uncharacterized protein.	0.697
A0A1B7N4Z8	A0A1B7MF05	TPR-like protein.	Uncharacterized protein.	0.562
A0A1B7N4Z8	A0A1B7MQ32	TPR-like protein.	Uncharacterized protein.	0.761
A0A1B7N4Z8	A0A1B7MXD9	TPR-like protein.	Uncharacterized protein.	0.851
A0A1B7N4Z8	A0A1B7NHD5	TPR-like protein.	Uncharacterized protein.	0.566
A0A1B7NHD5	A0A1B7MF05	Uncharacterized protein.	Uncharacterized protein.	0.657
A0A1B7NHD5	A0A1B7MQ32	Uncharacterized protein.	Uncharacterized protein.	0.707
A0A1B7NHD5	A0A1B7MXD9	Uncharacterized protein.	Uncharacterized protein.	0.697
A0A1B7NHD5	A0A1B7N4Z8	Uncharacterized protein.	TPR-like protein.	0.566