(12 nodes) Mixed, incl. Nuclear SCF ubiquitin ligase complex, and SCF-dependent proteasomal ubiquitin-dependent protein catabolic process network (Rhizopogon vinicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1B7MM29	WD40 repeat-like protein. (660 aa)
	A0A1B7MW36	Uncharacterized protein. (286 aa)
	A0A1B7MZN6	WD40 repeat-like protein. (1019 aa)
	A0A1B7N4V3	RING/U-box. (106 aa)
	A0A1B7N685	WD40 repeat-like protein. (629 aa)
	A0A1B7N9J9	WD40 repeat-like protein. (795 aa)
	A0A1B7NAT4	E3 ubiquitin ligase SCF complex Skp subunit; Belongs to the SKP1 family. (161 aa)
	A0A1B7NFU8	Putative ring-box protein 1. (106 aa)
	A0A1B7NH77	Uncharacterized protein. (91 aa)
	A0A1B7NHQ6	Cullin repeat-containing protein; Belongs to the cullin family. (479 aa)
	A0A1B7NI06	RNI-like protein. (914 aa)
	A0A1B7NIB8	RNI-like protein. (445 aa)

Your Current Organism:

Rhizopogon vinicolor

NCBI taxonomy Id: 1314800
Other names: R. vinicolor AM-OR11-026, Rhizopogon vinicolor AM-OR11-026

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1B7MM29	A0A1B7MW36	WD40 repeat-like protein.	Uncharacterized protein.	0.958
A0A1B7MM29	A0A1B7MZN6	WD40 repeat-like protein.	WD40 repeat-like protein.	0.891
A0A1B7MM29	A0A1B7N4V3	WD40 repeat-like protein.	RING/U-box.	0.949
A0A1B7MM29	A0A1B7N685	WD40 repeat-like protein.	WD40 repeat-like protein.	0.832
A0A1B7MM29	A0A1B7N9J9	WD40 repeat-like protein.	WD40 repeat-like protein.	0.885
A0A1B7MM29	A0A1B7NAT4	WD40 repeat-like protein.	E3 ubiquitin ligase SCF complex Skp subunit; Belongs to the SKP1 family.	0.987
A0A1B7MM29	A0A1B7NFU8	WD40 repeat-like protein.	Putative ring-box protein 1.	0.949
A0A1B7MM29	A0A1B7NH77	WD40 repeat-like protein.	Uncharacterized protein.	0.953
A0A1B7MM29	A0A1B7NHQ6	WD40 repeat-like protein.	Cullin repeat-containing protein; Belongs to the cullin family.	0.953
A0A1B7MM29	A0A1B7NI06	WD40 repeat-like protein.	RNI-like protein.	0.926
A0A1B7MM29	A0A1B7NIB8	WD40 repeat-like protein.	RNI-like protein.	0.899
A0A1B7MW36	A0A1B7MM29	Uncharacterized protein.	WD40 repeat-like protein.	0.958
A0A1B7MW36	A0A1B7MZN6	Uncharacterized protein.	WD40 repeat-like protein.	0.944
A0A1B7MW36	A0A1B7N4V3	Uncharacterized protein.	RING/U-box.	0.951
A0A1B7MW36	A0A1B7N685	Uncharacterized protein.	WD40 repeat-like protein.	0.943
A0A1B7MW36	A0A1B7N9J9	Uncharacterized protein.	WD40 repeat-like protein.	0.961
A0A1B7MW36	A0A1B7NFU8	Uncharacterized protein.	Putative ring-box protein 1.	0.951
A0A1B7MW36	A0A1B7NH77	Uncharacterized protein.	Uncharacterized protein.	0.861
A0A1B7MW36	A0A1B7NHQ6	Uncharacterized protein.	Cullin repeat-containing protein; Belongs to the cullin family.	0.861
A0A1B7MW36	A0A1B7NI06	Uncharacterized protein.	RNI-like protein.	0.960