(5 nodes) DNA double-strand break processing network (Rhizopogon vinicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1B7MXI0	Glycoside hydrolase. (736 aa)
	A0A1B7N9T6	Uncharacterized protein. (437 aa)
	A0A1B7N9V1	PIN domain-like protein. (317 aa)
	A0A1B7NFV4	SAE2 domain-containing protein. (161 aa)
	A0A1B7NGY3	DNA topoisomerase IV, alpha subunit. (291 aa)

Your Current Organism:

Rhizopogon vinicolor

NCBI taxonomy Id: 1314800
Other names: R. vinicolor AM-OR11-026, Rhizopogon vinicolor AM-OR11-026

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1B7MXI0	A0A1B7N9T6	Glycoside hydrolase.	Uncharacterized protein.	0.883
A0A1B7MXI0	A0A1B7N9V1	Glycoside hydrolase.	PIN domain-like protein.	0.883
A0A1B7MXI0	A0A1B7NFV4	Glycoside hydrolase.	SAE2 domain-containing protein.	0.716
A0A1B7N9T6	A0A1B7MXI0	Uncharacterized protein.	Glycoside hydrolase.	0.883
A0A1B7N9T6	A0A1B7N9V1	Uncharacterized protein.	PIN domain-like protein.	0.825
A0A1B7N9T6	A0A1B7NFV4	Uncharacterized protein.	SAE2 domain-containing protein.	0.931
A0A1B7N9T6	A0A1B7NGY3	Uncharacterized protein.	DNA topoisomerase IV, alpha subunit.	0.429
A0A1B7N9V1	A0A1B7MXI0	PIN domain-like protein.	Glycoside hydrolase.	0.883
A0A1B7N9V1	A0A1B7N9T6	PIN domain-like protein.	Uncharacterized protein.	0.825
A0A1B7N9V1	A0A1B7NFV4	PIN domain-like protein.	SAE2 domain-containing protein.	0.931
A0A1B7N9V1	A0A1B7NGY3	PIN domain-like protein.	DNA topoisomerase IV, alpha subunit.	0.429
A0A1B7NFV4	A0A1B7MXI0	SAE2 domain-containing protein.	Glycoside hydrolase.	0.716
A0A1B7NFV4	A0A1B7N9T6	SAE2 domain-containing protein.	Uncharacterized protein.	0.931
A0A1B7NFV4	A0A1B7N9V1	SAE2 domain-containing protein.	PIN domain-like protein.	0.931
A0A1B7NFV4	A0A1B7NGY3	SAE2 domain-containing protein.	DNA topoisomerase IV, alpha subunit.	0.425
A0A1B7NGY3	A0A1B7N9T6	DNA topoisomerase IV, alpha subunit.	Uncharacterized protein.	0.429
A0A1B7NGY3	A0A1B7N9V1	DNA topoisomerase IV, alpha subunit.	PIN domain-like protein.	0.429
A0A1B7NGY3	A0A1B7NFV4	DNA topoisomerase IV, alpha subunit.	SAE2 domain-containing protein.	0.425