(46 nodes) SCF ubiquitin ligase complex network (Rhizopogon vinicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1B7MII7	Cullin-1. (104 aa)
	A0A1B7MF68	WD40 repeat-like protein. (860 aa)
	A0A1B7MFB4	Cullin-domain-containing protein; Belongs to the cullin family. (967 aa)
	A0A1B7MGM1	WD40 repeat-like protein. (947 aa)
	A0A1B7MHJ7	WD40 repeat-like protein. (1414 aa)
	A0A1B7MII0	Cullin-domain-containing protein; Belongs to the cullin family. (609 aa)
	A0A1B7MJ35	WD40 repeat-like protein. (275 aa)
	A0A1B7MLG2	WD40 repeat-like protein. (492 aa)
	A0A1B7MLL9	WD40 repeat-like protein. (1428 aa)
	A0A1B7MM29	WD40 repeat-like protein. (660 aa)
	A0A1B7MMR6	WD40 repeat-like protein. (570 aa)
	A0A1B7MMZ5	WD40 repeat-like protein. (267 aa)
	A0A1B7MN63	WD40 repeat-like protein. (461 aa)
	A0A1B7MP99	WD40 repeat-like protein. (471 aa)
	A0A1B7MPA4	WD40 repeat-like protein. (513 aa)
	A0A1B7MPB1	WD40 repeat-like protein. (289 aa)
	A0A1B7MPB5	WD40 repeat-like protein. (467 aa)
	A0A1B7MPZ1	WD40 repeat-like protein. (1287 aa)
	A0A1B7MR76	WD40 repeat-like protein. (292 aa)
	A0A1B7MR95	WD40 repeat-like protein. (372 aa)
	A0A1B7MSD8	WD40 repeat-like protein. (1598 aa)
	A0A1B7MSN6	Uncharacterized protein. (848 aa)
	A0A1B7MTD3	WD40 repeat-like protein. (1524 aa)
	A0A1B7MU48	Uncharacterized protein. (470 aa)
	A0A1B7MUI4	WD40 repeat-like protein. (221 aa)
	A0A1B7MVN1	Cullin-domain-containing protein; Belongs to the cullin family. (654 aa)
	A0A1B7MZN6	WD40 repeat-like protein. (1019 aa)
	A0A1B7N2I8	WD40 repeat-like protein. (1619 aa)
	A0A1B7N3S3	WD40 repeat-like protein. (348 aa)
	A0A1B7N4V3	RING/U-box. (106 aa)
	A0A1B7N4X9	WD40 repeat-like protein. (798 aa)
	A0A1B7N685	WD40 repeat-like protein. (629 aa)
	A0A1B7N845	YVTN repeat-like/Quino protein amine dehydrogenase. (1350 aa)
	A0A1B7N8I5	Uncharacterized protein. (731 aa)
	A0A1B7N9J9	WD40 repeat-like protein. (795 aa)
	A0A1B7N9R4	WD40 repeat-like protein. (373 aa)
	A0A1B7NA29	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function. (113 aa)
	A0A1B7NB40	RNI-like protein. (968 aa)
	A0A1B7NFU8	Putative ring-box protein 1. (106 aa)
	A0A1B7NGD0	WD40 repeat-like protein. (350 aa)
	A0A1B7NH77	Uncharacterized protein. (91 aa)
	A0A1B7NHC0	Cullin-domain-containing protein; Belongs to the cullin family. (517 aa)
	A0A1B7NHQ6	Cullin repeat-containing protein; Belongs to the cullin family. (479 aa)
	A0A1B7NI21	WD40 repeat-like protein. (720 aa)
	A0A1B7NI45	Uncharacterized protein. (328 aa)
	A0A1B7NIB8	RNI-like protein. (445 aa)

Your Current Organism:

Rhizopogon vinicolor

NCBI taxonomy Id: 1314800
Other names: R. vinicolor AM-OR11-026, Rhizopogon vinicolor AM-OR11-026

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1B7MFB4	A0A1B7MII7	Cullin-domain-containing protein; Belongs to the cullin family.	Cullin-1.	0.731
A0A1B7MFB4	A0A1B7MJ35	Cullin-domain-containing protein; Belongs to the cullin family.	WD40 repeat-like protein.	0.831
A0A1B7MFB4	A0A1B7MM29	Cullin-domain-containing protein; Belongs to the cullin family.	WD40 repeat-like protein.	0.897
A0A1B7MFB4	A0A1B7MSN6	Cullin-domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.837
A0A1B7MFB4	A0A1B7MU48	Cullin-domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.875
A0A1B7MFB4	A0A1B7MZN6	Cullin-domain-containing protein; Belongs to the cullin family.	WD40 repeat-like protein.	0.880
A0A1B7MFB4	A0A1B7N4V3	Cullin-domain-containing protein; Belongs to the cullin family.	RING/U-box.	0.885
A0A1B7MFB4	A0A1B7N685	Cullin-domain-containing protein; Belongs to the cullin family.	WD40 repeat-like protein.	0.871
A0A1B7MFB4	A0A1B7N8I5	Cullin-domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.455
A0A1B7MFB4	A0A1B7N9J9	Cullin-domain-containing protein; Belongs to the cullin family.	WD40 repeat-like protein.	0.883
A0A1B7MFB4	A0A1B7NA29	Cullin-domain-containing protein; Belongs to the cullin family.	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	0.815
A0A1B7MFB4	A0A1B7NB40	Cullin-domain-containing protein; Belongs to the cullin family.	RNI-like protein.	0.785
A0A1B7MFB4	A0A1B7NFU8	Cullin-domain-containing protein; Belongs to the cullin family.	Putative ring-box protein 1.	0.885
A0A1B7MFB4	A0A1B7NI21	Cullin-domain-containing protein; Belongs to the cullin family.	WD40 repeat-like protein.	0.880
A0A1B7MFB4	A0A1B7NIB8	Cullin-domain-containing protein; Belongs to the cullin family.	RNI-like protein.	0.877
A0A1B7MII0	A0A1B7MJ35	Cullin-domain-containing protein; Belongs to the cullin family.	WD40 repeat-like protein.	0.831
A0A1B7MII0	A0A1B7MM29	Cullin-domain-containing protein; Belongs to the cullin family.	WD40 repeat-like protein.	0.897
A0A1B7MII0	A0A1B7MSN6	Cullin-domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.837
A0A1B7MII0	A0A1B7MU48	Cullin-domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.875
A0A1B7MII0	A0A1B7MZN6	Cullin-domain-containing protein; Belongs to the cullin family.	WD40 repeat-like protein.	0.880