(38 nodes) Protein folding chaperone network (Rhizopogon vinicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1B7MTA8	Uncharacterized protein. (83 aa)
	A0A1B7MF07	HSP70-domain-containing protein. (223 aa)
	A0A1B7MFF1	HSP70-domain-containing protein. (108 aa)
	A0A1B7ME44	HSP70-domain-containing protein. (331 aa)
	A0A1B7MFI4	Uncharacterized protein. (97 aa)
	A0A1B7MEJ5	HSP70-domain-containing protein. (122 aa)
	A0A1B7MH67	Uncharacterized protein. (91 aa)
	A0A1B7MJP5	DnaJ-domain-containing protein. (383 aa)
	A0A1B7MKC5	Heat shock protein 70. (65 aa)
	A0A1B7MKM3	Prefoldin. (122 aa)
	A0A1B7MNQ1	Heat shock protein 70. (782 aa)
	A0A1B7MRI8	Heat shock protein HSS1; Belongs to the heat shock protein 70 family. (589 aa)
	A0A1B7MSI2	T-complex protein 1. (562 aa)
	A0A1B7MT22	T-complex protein 1. (558 aa)
	A0A1B7MWF0	Uncharacterized protein. (542 aa)
	A0A1B7MWK0	Uncharacterized protein. (524 aa)
	A0A1B7MWV4	Heat shock protein HSS1; Belongs to the heat shock protein 70 family. (649 aa)
	A0A1B7MX83	T-complex protein 1 subunit delta. (536 aa)
	A0A1B7MY86	Uncharacterized protein. (218 aa)
	A0A1B7MYQ9	Actin-like ATPase domain-containing protein. (831 aa)
	A0A1B7N1Q6	HSP70-domain-containing protein. (260 aa)
	A0A1B7N3H1	Actin-like ATPase domain-containing protein; Belongs to the heat shock protein 70 family. (618 aa)
	A0A1B7N3Z9	T-complex protein 1 subunit gamma. (542 aa)
	A0A1B7N558	Uncharacterized protein. (132 aa)
	A0A1B7N5E7	Heat shock protein 70. (84 aa)
	A0A1B7N5H3	DnaJ-domain-containing protein. (209 aa)
	A0A1B7N5U8	BTB domain-containing protein. (386 aa)
	A0A1B7N6M1	Protein BCP1; Involved in nuclear export, actin cytoskeleton organization and vesicular transport; Belongs to the BCP1 family. (288 aa)
	A0A1B7N721	BTB domain-containing protein. (344 aa)
	A0A1B7NA97	Chaperonin GroL; Belongs to the chaperonin (HSP60) family. (589 aa)
	A0A1B7NAR4	Chaperonin Cpn10; Belongs to the GroES chaperonin family. (107 aa)
	A0A1B7NBB1	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin. (570 aa)
	A0A1B7NEK6	Heat shock protein 70; Belongs to the heat shock protein 70 family. (659 aa)
	A0A1B7NGM7	Prefoldin beta-like protein. (125 aa)
	A0A1B7NGV2	Heat shock protein 70. (97 aa)
	A0A1B7NGV3	T-complex protein 1 zeta subunit. (552 aa)
	A0A1B7MVF7	Heat shock protein 70; Belongs to the heat shock protein 70 family. (614 aa)
	A0A1B7MW83	Heat shock protein; Belongs to the heat shock protein 70 family. (665 aa)

Your Current Organism:

Rhizopogon vinicolor

NCBI taxonomy Id: 1314800
Other names: R. vinicolor AM-OR11-026, Rhizopogon vinicolor AM-OR11-026

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1B7ME44	A0A1B7MJP5	HSP70-domain-containing protein.	DnaJ-domain-containing protein.	0.758
A0A1B7ME44	A0A1B7MNQ1	HSP70-domain-containing protein.	Heat shock protein 70.	0.874
A0A1B7ME44	A0A1B7MSI2	HSP70-domain-containing protein.	T-complex protein 1.	0.621
A0A1B7ME44	A0A1B7MVF7	HSP70-domain-containing protein.	Heat shock protein 70; Belongs to the heat shock protein 70 family.	0.811
A0A1B7ME44	A0A1B7MW83	HSP70-domain-containing protein.	Heat shock protein; Belongs to the heat shock protein 70 family.	0.746
A0A1B7ME44	A0A1B7MWF0	HSP70-domain-containing protein.	Uncharacterized protein.	0.608
A0A1B7ME44	A0A1B7MWK0	HSP70-domain-containing protein.	Uncharacterized protein.	0.601
A0A1B7ME44	A0A1B7MX83	HSP70-domain-containing protein.	T-complex protein 1 subunit delta.	0.597
A0A1B7ME44	A0A1B7MY86	HSP70-domain-containing protein.	Uncharacterized protein.	0.601
A0A1B7ME44	A0A1B7N3Z9	HSP70-domain-containing protein.	T-complex protein 1 subunit gamma.	0.598
A0A1B7ME44	A0A1B7N5H3	HSP70-domain-containing protein.	DnaJ-domain-containing protein.	0.707
A0A1B7ME44	A0A1B7NA97	HSP70-domain-containing protein.	Chaperonin GroL; Belongs to the chaperonin (HSP60) family.	0.638
A0A1B7ME44	A0A1B7NAR4	HSP70-domain-containing protein.	Chaperonin Cpn10; Belongs to the GroES chaperonin family.	0.666
A0A1B7ME44	A0A1B7NBB1	HSP70-domain-containing protein.	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.606
A0A1B7ME44	A0A1B7NEK6	HSP70-domain-containing protein.	Heat shock protein 70; Belongs to the heat shock protein 70 family.	0.851
A0A1B7ME44	A0A1B7NGV3	HSP70-domain-containing protein.	T-complex protein 1 zeta subunit.	0.630
A0A1B7MEJ5	A0A1B7MJP5	HSP70-domain-containing protein.	DnaJ-domain-containing protein.	0.850
A0A1B7MEJ5	A0A1B7MNQ1	HSP70-domain-containing protein.	Heat shock protein 70.	0.933
A0A1B7MEJ5	A0A1B7MSI2	HSP70-domain-containing protein.	T-complex protein 1.	0.621
A0A1B7MEJ5	A0A1B7MVF7	HSP70-domain-containing protein.	Heat shock protein 70; Belongs to the heat shock protein 70 family.	0.817