(10 nodes) Proteasome regulatory particle assembly network (Rhizopogon vinicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1B7NDH0	26S proteasome subunit P45; Belongs to the AAA ATPase family. (463 aa)
	A0A1B7MKZ6	Ankyrin. (135 aa)
	A0A1B7MYC9	Uncharacterized protein. (273 aa)
	A0A1B7N1U9	26S proteasome subunit P45; Belongs to the AAA ATPase family. (453 aa)
	A0A1B7N4C0	26S proteasome regulatory complex, ATPase RPT6; Belongs to the AAA ATPase family. (401 aa)
	A0A1B7NCF5	Uncharacterized protein. (287 aa)
	A0A1B7NDN8	Nas2_N domain-containing protein. (213 aa)
	A0A1B7NF87	26S proteasome subunit P45; Belongs to the AAA ATPase family. (419 aa)
	A0A1B7NG73	26S proteasome subunit P45. (907 aa)
	A0A1B7NGM0	26S proteasome subunit P45; Belongs to the AAA ATPase family. (388 aa)

Your Current Organism:

Rhizopogon vinicolor

NCBI taxonomy Id: 1314800
Other names: R. vinicolor AM-OR11-026, Rhizopogon vinicolor AM-OR11-026

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1B7MKZ6	A0A1B7MYC9	Ankyrin.	Uncharacterized protein.	0.846
A0A1B7MKZ6	A0A1B7N1U9	Ankyrin.	26S proteasome subunit P45; Belongs to the AAA ATPase family.	0.989
A0A1B7MKZ6	A0A1B7N4C0	Ankyrin.	26S proteasome regulatory complex, ATPase RPT6; Belongs to the AAA ATPase family.	0.992
A0A1B7MKZ6	A0A1B7NCF5	Ankyrin.	Uncharacterized protein.	0.846
A0A1B7MKZ6	A0A1B7NDH0	Ankyrin.	26S proteasome subunit P45; Belongs to the AAA ATPase family.	0.990
A0A1B7MKZ6	A0A1B7NDN8	Ankyrin.	Nas2_N domain-containing protein.	0.935
A0A1B7MKZ6	A0A1B7NF87	Ankyrin.	26S proteasome subunit P45; Belongs to the AAA ATPase family.	0.989
A0A1B7MKZ6	A0A1B7NG73	Ankyrin.	26S proteasome subunit P45.	0.989
A0A1B7MKZ6	A0A1B7NGM0	Ankyrin.	26S proteasome subunit P45; Belongs to the AAA ATPase family.	0.991
A0A1B7MYC9	A0A1B7MKZ6	Uncharacterized protein.	Ankyrin.	0.846
A0A1B7MYC9	A0A1B7N1U9	Uncharacterized protein.	26S proteasome subunit P45; Belongs to the AAA ATPase family.	0.888
A0A1B7MYC9	A0A1B7N4C0	Uncharacterized protein.	26S proteasome regulatory complex, ATPase RPT6; Belongs to the AAA ATPase family.	0.957
A0A1B7MYC9	A0A1B7NDH0	Uncharacterized protein.	26S proteasome subunit P45; Belongs to the AAA ATPase family.	0.966
A0A1B7MYC9	A0A1B7NF87	Uncharacterized protein.	26S proteasome subunit P45; Belongs to the AAA ATPase family.	0.947
A0A1B7MYC9	A0A1B7NG73	Uncharacterized protein.	26S proteasome subunit P45.	0.920
A0A1B7MYC9	A0A1B7NGM0	Uncharacterized protein.	26S proteasome subunit P45; Belongs to the AAA ATPase family.	0.967
A0A1B7N1U9	A0A1B7MKZ6	26S proteasome subunit P45; Belongs to the AAA ATPase family.	Ankyrin.	0.989
A0A1B7N1U9	A0A1B7MYC9	26S proteasome subunit P45; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.888
A0A1B7N1U9	A0A1B7N4C0	26S proteasome subunit P45; Belongs to the AAA ATPase family.	26S proteasome regulatory complex, ATPase RPT6; Belongs to the AAA ATPase family.	0.999
A0A1B7N1U9	A0A1B7NCF5	26S proteasome subunit P45; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.888