(15 nodes) ncRNA transcription network (Rhizopogon vinicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1B7N0F4	Uncharacterized protein. (170 aa)
	A0A1B7N2W5	Uncharacterized protein. (1174 aa)
	A0A1B7N6B0	Uncharacterized protein. (1932 aa)
	A0A1B7N8B1	Uncharacterized protein. (346 aa)
	A0A1B7N8Y2	RBP11-like subunits of RNA polymerase. (111 aa)
	A0A1B7NBP6	Plus-3-domain-containing protein. (554 aa)
	A0A1B7NCS1	RNA polymerase Rpb6. (177 aa)
	A0A1B7NDG8	Uncharacterized protein. (65 aa)
	A0A1B7MSB2	TPR-like protein. (940 aa)
	A0A1B7MUL9	Uncharacterized protein. (222 aa)
	A0A1B7MWQ2	Uncharacterized protein. (82 aa)
	A0A1B7MYN7	Rpa49 subunit specific to nuclear RNA polymerase I. (422 aa)
	A0A1B7NEI3	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1222 aa)
	A0A1B7NFP0	SWIB-domain-containing protein. (271 aa)
	A0A1B7N0D9	Uncharacterized protein. (73 aa)

Your Current Organism:

Rhizopogon vinicolor

NCBI taxonomy Id: 1314800
Other names: R. vinicolor AM-OR11-026, Rhizopogon vinicolor AM-OR11-026

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1B7MSB2	A0A1B7MUL9	TPR-like protein.	Uncharacterized protein.	0.716
A0A1B7MSB2	A0A1B7N8Y2	TPR-like protein.	RBP11-like subunits of RNA polymerase.	0.570
A0A1B7MSB2	A0A1B7NCS1	TPR-like protein.	RNA polymerase Rpb6.	0.719
A0A1B7MSB2	A0A1B7NDG8	TPR-like protein.	Uncharacterized protein.	0.805
A0A1B7MSB2	A0A1B7NEI3	TPR-like protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.733
A0A1B7MUL9	A0A1B7MSB2	Uncharacterized protein.	TPR-like protein.	0.716
A0A1B7MUL9	A0A1B7MYN7	Uncharacterized protein.	Rpa49 subunit specific to nuclear RNA polymerase I.	0.628
A0A1B7MUL9	A0A1B7N0D9	Uncharacterized protein.	Uncharacterized protein.	0.996
A0A1B7MUL9	A0A1B7N0F4	Uncharacterized protein.	Uncharacterized protein.	0.484
A0A1B7MUL9	A0A1B7N8Y2	Uncharacterized protein.	RBP11-like subunits of RNA polymerase.	0.998
A0A1B7MUL9	A0A1B7NCS1	Uncharacterized protein.	RNA polymerase Rpb6.	0.997
A0A1B7MUL9	A0A1B7NDG8	Uncharacterized protein.	Uncharacterized protein.	0.997
A0A1B7MUL9	A0A1B7NEI3	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.974
A0A1B7MWQ2	A0A1B7N0D9	Uncharacterized protein.	Uncharacterized protein.	0.898
A0A1B7MWQ2	A0A1B7N0F4	Uncharacterized protein.	Uncharacterized protein.	0.862
A0A1B7MWQ2	A0A1B7NCS1	Uncharacterized protein.	RNA polymerase Rpb6.	0.899
A0A1B7MWQ2	A0A1B7NDG8	Uncharacterized protein.	Uncharacterized protein.	0.908
A0A1B7MWQ2	A0A1B7NEI3	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.795
A0A1B7MYN7	A0A1B7MUL9	Rpa49 subunit specific to nuclear RNA polymerase I.	Uncharacterized protein.	0.628
A0A1B7MYN7	A0A1B7N0D9	Rpa49 subunit specific to nuclear RNA polymerase I.	Uncharacterized protein.	0.993