STRINGSTRING
AMK21106.1 AMK21106.1 AMK22253.1 AMK22253.1 AMK22254.1 AMK22254.1 sdhA sdhA sucC sucC AMK22573.1 AMK22573.1 AMK22742.1 AMK22742.1 AMK23841.1 AMK23841.1 AMK23894.1 AMK23894.1 sucD sucD sdhB sdhB AMK24105.1 AMK24105.1 AMK25302.1 AMK25302.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AMK21106.1COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits. (1155 aa)
AMK22253.1COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit. (110 aa)
AMK22254.1COG2142 Succinate dehydrogenase, hydrophobic anchor subunit. (129 aa)
sdhACOG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (600 aa)
sucCsuccinyl-CoA synthetase subunit beta; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. (399 aa)
AMK22573.1COG0372 Citrate synthase; Belongs to the citrate synthase family. (428 aa)
AMK22742.1COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit. (506 aa)
AMK23841.1Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. (889 aa)
AMK23894.1COG0538 Isocitrate dehydrogenases; Belongs to the isocitrate and isopropylmalate dehydrogenases family. (406 aa)
sucDsuccinyl-CoA synthetase subunit alpha; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (294 aa)
sdhBCOG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (262 aa)
AMK24105.1COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit. (483 aa)
AMK25302.1FAD binding domain-containing protein 15; COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit. (556 aa)
Your Current Organism:
Sphingobium sp. TKS
NCBI taxonomy Id: 1315974
Other names: S. sp. TKS
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