13 items (Penicillium subrubescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PENSUB_13536	Protein MMF1, mitochondrial. (138 aa)
	PENSUB_12136	Uncharacterized protein. (100 aa)
	PENSUB_10337	Protein mmf2, mitochondrial. (111 aa)
	PENSUB_9921	Acetolactate synthase-like protein. (234 aa)
	PENSUB_9109	2-iminobutanoate/2-iminopropanoate deaminase. (107 aa)
	PENSUB_8398	Proline utilization trans-activator. (371 aa)
	PENSUB_8399	Uncharacterized protein. (123 aa)
	PENSUB_8397	Uncharacterized protein. (164 aa)
	PENSUB_6205	Cytokinin dehydrogenase 11. (499 aa)
	PENSUB_4937	AB hydrolase-1 domain-containing protein. (523 aa)
	PENSUB_4369	Uncharacterized protein. (158 aa)
	PENSUB_3481	Uncharacterized protein. (200 aa)
	PENSUB_1108	Benzoylformate decarboxylase; Belongs to the TPP enzyme family. (539 aa)

Your Current Organism:

Penicillium subrubescens

NCBI taxonomy Id: 1316194
Other names: CBS 132785, CBS H-21029, DTO 188-D6, IBT 31985, P. subrubescens

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PENSUB_10337	PENSUB_1108	A0A1Q5TBF0	A0A1Q5UKJ6	Protein mmf2, mitochondrial.	Benzoylformate decarboxylase; Belongs to the TPP enzyme family.	0.519
PENSUB_10337	PENSUB_12136	A0A1Q5TBF0	A0A1Q5T0Q7	Protein mmf2, mitochondrial.	Uncharacterized protein.	0.625
PENSUB_10337	PENSUB_13536	A0A1Q5TBF0	A0A1Q5SQ41	Protein mmf2, mitochondrial.	Protein MMF1, mitochondrial.	0.490
PENSUB_10337	PENSUB_3481	A0A1Q5TBF0	A0A1Q5UF57	Protein mmf2, mitochondrial.	Uncharacterized protein.	0.625
PENSUB_10337	PENSUB_4369	A0A1Q5TBF0	A0A1Q5UCJ3	Protein mmf2, mitochondrial.	Uncharacterized protein.	0.625
PENSUB_10337	PENSUB_6205	A0A1Q5TBF0	A0A1Q5U2L2	Protein mmf2, mitochondrial.	Cytokinin dehydrogenase 11.	0.519
PENSUB_10337	PENSUB_9109	A0A1Q5TBF0	A0A1Q5TDZ3	Protein mmf2, mitochondrial.	2-iminobutanoate/2-iminopropanoate deaminase.	0.465
PENSUB_10337	PENSUB_9921	A0A1Q5TBF0	A0A1Q5TBS8	Protein mmf2, mitochondrial.	Acetolactate synthase-like protein.	0.519
PENSUB_1108	PENSUB_10337	A0A1Q5UKJ6	A0A1Q5TBF0	Benzoylformate decarboxylase; Belongs to the TPP enzyme family.	Protein mmf2, mitochondrial.	0.519
PENSUB_1108	PENSUB_12136	A0A1Q5UKJ6	A0A1Q5T0Q7	Benzoylformate decarboxylase; Belongs to the TPP enzyme family.	Uncharacterized protein.	0.695
PENSUB_1108	PENSUB_13536	A0A1Q5UKJ6	A0A1Q5SQ41	Benzoylformate decarboxylase; Belongs to the TPP enzyme family.	Protein MMF1, mitochondrial.	0.519
PENSUB_1108	PENSUB_3481	A0A1Q5UKJ6	A0A1Q5UF57	Benzoylformate decarboxylase; Belongs to the TPP enzyme family.	Uncharacterized protein.	0.695
PENSUB_1108	PENSUB_4369	A0A1Q5UKJ6	A0A1Q5UCJ3	Benzoylformate decarboxylase; Belongs to the TPP enzyme family.	Uncharacterized protein.	0.695
PENSUB_1108	PENSUB_4937	A0A1Q5UKJ6	A0A1Q5UB16	Benzoylformate decarboxylase; Belongs to the TPP enzyme family.	AB hydrolase-1 domain-containing protein.	0.426
PENSUB_1108	PENSUB_8397	A0A1Q5UKJ6	A0A1Q5TH65	Benzoylformate decarboxylase; Belongs to the TPP enzyme family.	Uncharacterized protein.	0.519
PENSUB_1108	PENSUB_8398	A0A1Q5UKJ6	A0A1Q5TH47	Benzoylformate decarboxylase; Belongs to the TPP enzyme family.	Proline utilization trans-activator.	0.519
PENSUB_1108	PENSUB_8399	A0A1Q5UKJ6	A0A1Q5TH51	Benzoylformate decarboxylase; Belongs to the TPP enzyme family.	Uncharacterized protein.	0.519
PENSUB_1108	PENSUB_9109	A0A1Q5UKJ6	A0A1Q5TDZ3	Benzoylformate decarboxylase; Belongs to the TPP enzyme family.	2-iminobutanoate/2-iminopropanoate deaminase.	0.519
PENSUB_12136	PENSUB_10337	A0A1Q5T0Q7	A0A1Q5TBF0	Uncharacterized protein.	Protein mmf2, mitochondrial.	0.625
PENSUB_12136	PENSUB_1108	A0A1Q5T0Q7	A0A1Q5UKJ6	Uncharacterized protein.	Benzoylformate decarboxylase; Belongs to the TPP enzyme family.	0.695