6 items (Penicillium subrubescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PENSUB_12136	Uncharacterized protein. (100 aa)
	PENSUB_12187	L-serine dehydratase. (356 aa)
	PENSUB_7790	L-serine dehydratase. (473 aa)
	PENSUB_7826	Threonine dehydratase. (566 aa)
	PENSUB_4369	Uncharacterized protein. (158 aa)
	PENSUB_3481	Uncharacterized protein. (200 aa)

Your Current Organism:

Penicillium subrubescens

NCBI taxonomy Id: 1316194
Other names: CBS 132785, CBS H-21029, DTO 188-D6, IBT 31985, P. subrubescens

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PENSUB_12136	PENSUB_7826	A0A1Q5T0Q7	A0A1Q5TJH1	Uncharacterized protein.	Threonine dehydratase.	0.564
PENSUB_12187	PENSUB_7826	A0A1Q5T0V6	A0A1Q5TJH1	L-serine dehydratase.	Threonine dehydratase.	0.865
PENSUB_3481	PENSUB_7826	A0A1Q5UF57	A0A1Q5TJH1	Uncharacterized protein.	Threonine dehydratase.	0.564
PENSUB_4369	PENSUB_7826	A0A1Q5UCJ3	A0A1Q5TJH1	Uncharacterized protein.	Threonine dehydratase.	0.564
PENSUB_7790	PENSUB_7826	A0A1Q5TJD1	A0A1Q5TJH1	L-serine dehydratase.	Threonine dehydratase.	0.884
PENSUB_7826	PENSUB_12136	A0A1Q5TJH1	A0A1Q5T0Q7	Threonine dehydratase.	Uncharacterized protein.	0.564
PENSUB_7826	PENSUB_12187	A0A1Q5TJH1	A0A1Q5T0V6	Threonine dehydratase.	L-serine dehydratase.	0.865
PENSUB_7826	PENSUB_3481	A0A1Q5TJH1	A0A1Q5UF57	Threonine dehydratase.	Uncharacterized protein.	0.564
PENSUB_7826	PENSUB_4369	A0A1Q5TJH1	A0A1Q5UCJ3	Threonine dehydratase.	Uncharacterized protein.	0.564
PENSUB_7826	PENSUB_7790	A0A1Q5TJH1	A0A1Q5TJD1	Threonine dehydratase.	L-serine dehydratase.	0.884