27 items (Penicillium subrubescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PENSUB_3247	Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family. (787 aa)
	PENSUB_13087	Hippurate hydrolase. (420 aa)
	PENSUB_13002	Fungal_trans domain-containing protein. (641 aa)
	PENSUB_12294	Monomeric sarcosine oxidase. (426 aa)
	PENSUB_11370	Aconitate hydratase, mitochondrial. (468 aa)
	PENSUB_10027	L-saccharopine oxidase. (446 aa)
	PENSUB_10173	Semialdhyde_dhC domain-containing protein. (267 aa)
	PENSUB_10174	Aspartate-semialdehyde dehydrogenase. (106 aa)
	PENSUB_9885	Isochorismatase domain-containing protein. (205 aa)
	PENSUB_9579	L-pipecolate oxidase. (447 aa)
	PENSUB_9578	Fungal_trans domain-containing protein. (576 aa)
	PENSUB_9433	L-pipecolate oxidase. (429 aa)
	PENSUB_9434	Uncharacterized protein. (253 aa)
	PENSUB_9205	Homoaconitase, mitochondrial; Catalyzes the reversible hydration of cis-homoaconitate to (2R,3S)-homoisocitrate, a step in the alpha-aminoadipate pathway for lysine biosynthesis. (782 aa)
	PENSUB_8801	Saccharopine dehydrogenase [NAD(+), L-lysine-forming]; Belongs to the AlaDH/PNT family. (376 aa)
	PENSUB_8130	L-pipecolate oxidase. (348 aa)
	PENSUB_7667	L-pipecolate oxidase. (445 aa)
	PENSUB_6919	Lipoyl-binding domain-containing protein. (451 aa)
	PENSUB_6789	L-pipecolate oxidase. (438 aa)
	PENSUB_4456	L-saccharopine oxidase. (351 aa)
	PENSUB_3760	ACPS domain-containing protein. (408 aa)
	PENSUB_2762	Homocitrate synthase, mitochondrial; Belongs to the alpha-IPM synthase/homocitrate synthase family. (465 aa)
	PENSUB_1585	Saccharopine dehydrogenase [NADP(+), L-glutamate-forming]. (450 aa)
	PENSUB_1234	Hippurate hydrolase. (264 aa)
	PENSUB_880	L-saccharopine oxidase. (436 aa)
	PENSUB_5835	Homoisocitrate dehydrogenase. (361 aa)
	PENSUB_3382	annotation not available (225 aa)

Your Current Organism:

Penicillium subrubescens

NCBI taxonomy Id: 1316194
Other names: CBS 132785, CBS H-21029, DTO 188-D6, IBT 31985, P. subrubescens

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PENSUB_10027	PENSUB_13002	A0A1Q5TAJ0	A0A1Q5SUQ1	L-saccharopine oxidase.	Fungal_trans domain-containing protein.	0.495
PENSUB_10173	PENSUB_10174	A0A1Q5TAV4	A0A1Q5TB56	Semialdhyde_dhC domain-containing protein.	Aspartate-semialdehyde dehydrogenase.	0.951
PENSUB_10173	PENSUB_1585	A0A1Q5TAV4	A0A1Q5UK81	Semialdhyde_dhC domain-containing protein.	Saccharopine dehydrogenase [NADP(+), L-glutamate-forming].	0.654
PENSUB_10173	PENSUB_8801	A0A1Q5TAV4	A0A1Q5TF80	Semialdhyde_dhC domain-containing protein.	Saccharopine dehydrogenase [NAD(+), L-lysine-forming]; Belongs to the AlaDH/PNT family.	0.667
PENSUB_10174	PENSUB_10173	A0A1Q5TB56	A0A1Q5TAV4	Aspartate-semialdehyde dehydrogenase.	Semialdhyde_dhC domain-containing protein.	0.951
PENSUB_10174	PENSUB_1585	A0A1Q5TB56	A0A1Q5UK81	Aspartate-semialdehyde dehydrogenase.	Saccharopine dehydrogenase [NADP(+), L-glutamate-forming].	0.654
PENSUB_10174	PENSUB_8801	A0A1Q5TB56	A0A1Q5TF80	Aspartate-semialdehyde dehydrogenase.	Saccharopine dehydrogenase [NAD(+), L-lysine-forming]; Belongs to the AlaDH/PNT family.	0.667
PENSUB_11370	PENSUB_2762	A0A1Q5T410	A0A1Q5UGS9	Aconitate hydratase, mitochondrial.	Homocitrate synthase, mitochondrial; Belongs to the alpha-IPM synthase/homocitrate synthase family.	0.646
PENSUB_11370	PENSUB_3382	A0A1Q5T410	A0A1Q5UR82	Aconitate hydratase, mitochondrial.	annotation not available	0.728
PENSUB_11370	PENSUB_5835	A0A1Q5T410	A0A1Q5UQM6	Aconitate hydratase, mitochondrial.	Homoisocitrate dehydrogenase.	0.740
PENSUB_11370	PENSUB_6919	A0A1Q5T410	A0A1Q5TRJ6	Aconitate hydratase, mitochondrial.	Lipoyl-binding domain-containing protein.	0.728
PENSUB_11370	PENSUB_9885	A0A1Q5T410	A0A1Q5TBX8	Aconitate hydratase, mitochondrial.	Isochorismatase domain-containing protein.	0.719
PENSUB_13002	PENSUB_10027	A0A1Q5SUQ1	A0A1Q5TAJ0	Fungal_trans domain-containing protein.	L-saccharopine oxidase.	0.495
PENSUB_13002	PENSUB_6789	A0A1Q5SUQ1	A0A1Q5TUA7	Fungal_trans domain-containing protein.	L-pipecolate oxidase.	0.591
PENSUB_13002	PENSUB_8130	A0A1Q5SUQ1	A0A1Q5TI68	Fungal_trans domain-containing protein.	L-pipecolate oxidase.	0.585
PENSUB_1585	PENSUB_10173	A0A1Q5UK81	A0A1Q5TAV4	Saccharopine dehydrogenase [NADP(+), L-glutamate-forming].	Semialdhyde_dhC domain-containing protein.	0.654
PENSUB_1585	PENSUB_10174	A0A1Q5UK81	A0A1Q5TB56	Saccharopine dehydrogenase [NADP(+), L-glutamate-forming].	Aspartate-semialdehyde dehydrogenase.	0.654
PENSUB_1585	PENSUB_2762	A0A1Q5UK81	A0A1Q5UGS9	Saccharopine dehydrogenase [NADP(+), L-glutamate-forming].	Homocitrate synthase, mitochondrial; Belongs to the alpha-IPM synthase/homocitrate synthase family.	0.586
PENSUB_1585	PENSUB_5835	A0A1Q5UK81	A0A1Q5UQM6	Saccharopine dehydrogenase [NADP(+), L-glutamate-forming].	Homoisocitrate dehydrogenase.	0.877
PENSUB_1585	PENSUB_8801	A0A1Q5UK81	A0A1Q5TF80	Saccharopine dehydrogenase [NADP(+), L-glutamate-forming].	Saccharopine dehydrogenase [NAD(+), L-lysine-forming]; Belongs to the AlaDH/PNT family.	0.973