(39 nodes) Mixed, incl. Cellular polysaccharide biosynthetic process, and Actinobacterium-type cell wall biogenesis network (Rhodococcus defluvii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000738775_00055	Unannotated protein. (1422 aa)
	GCA_000738775_00056	Unannotated protein. (399 aa)
	GCA_000738775_00057	Unannotated protein. (381 aa)
	GCA_000738775_00058	Unannotated protein. (384 aa)
	GCA_000738775_00059	Unannotated protein. (583 aa)
	GCA_000738775_00060	Unannotated protein. (412 aa)
	GCA_000738775_00061	Unannotated protein. (259 aa)
	GCA_000738775_00112	Unannotated protein. (329 aa)
	GCA_000738775_01217	Unannotated protein. (190 aa)
	GCA_000738775_01442	Unannotated protein. (261 aa)
	GCA_000738775_01456	Unannotated protein. (212 aa)
	GCA_000738775_01457	Unannotated protein. (174 aa)
	GCA_000738775_01458	Unannotated protein. (180 aa)
	GCA_000738775_01598	Unannotated protein. (218 aa)
	GCA_000738775_01874	Unannotated protein. (618 aa)
	GCA_000738775_02041	Unannotated protein. (82 aa)
	GCA_000738775_02118	Unannotated protein. (685 aa)
	GCA_000738775_02127	Unannotated protein. (628 aa)
	GCA_000738775_02129	Unannotated protein. (305 aa)
	GCA_000738775_02166	Unannotated protein. (1093 aa)
	GCA_000738775_02518	Unannotated protein. (417 aa)
	GCA_000738775_02798	Unannotated protein. (435 aa)
	GCA_000738775_02867	Unannotated protein. (546 aa)
	GCA_000738775_03123	Unannotated protein. (225 aa)
	GCA_000738775_03124	Unannotated protein. (390 aa)
	GCA_000738775_03126	Unannotated protein. (396 aa)
	GCA_000738775_03192	Unannotated protein. (206 aa)
	GCA_000738775_03240	Unannotated protein. (162 aa)
	GCA_000738775_03297	Unannotated protein. (625 aa)
	GCA_000738775_03298	Unannotated protein. (416 aa)
	GCA_000738775_03411	Unannotated protein. (348 aa)
	GCA_000738775_03446	Unannotated protein. (225 aa)
	GCA_000738775_03952	Unannotated protein. (244 aa)
	GCA_000738775_04048	Unannotated protein. (867 aa)
	GCA_000738775_04165	Unannotated protein. (126 aa)
	GCA_000738775_04254	Unannotated protein. (175 aa)
	GCA_000738775_04606	Unannotated protein. (317 aa)
	GCA_000738775_04608	Unannotated protein. (521 aa)
	GCA_000738775_04609	Unannotated protein. (421 aa)

Your Current Organism:

Rhodococcus defluvii

NCBI taxonomy Id: 1323361
Other names: DSM 45893, LMG 27563, LMG:27563, R. defluvii, Rhodococcus sp. Ca11, strain Ca11

Send network to Cytoscape

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000738775_00055	GCA_000738775_00057	Unannotated protein.	Unannotated protein.	0.793
GCA_000738775_00055	GCA_000738775_00058	Unannotated protein.	Unannotated protein.	0.529
GCA_000738775_00055	GCA_000738775_00059	Unannotated protein.	Unannotated protein.	0.945
GCA_000738775_00055	GCA_000738775_00060	Unannotated protein.	Unannotated protein.	0.714
GCA_000738775_00055	GCA_000738775_00061	Unannotated protein.	Unannotated protein.	0.868
GCA_000738775_00055	GCA_000738775_00112	Unannotated protein.	Unannotated protein.	0.461
GCA_000738775_00055	GCA_000738775_01217	Unannotated protein.	Unannotated protein.	0.630
GCA_000738775_00055	GCA_000738775_01442	Unannotated protein.	Unannotated protein.	0.423
GCA_000738775_00055	GCA_000738775_01457	Unannotated protein.	Unannotated protein.	0.555
GCA_000738775_00055	GCA_000738775_01458	Unannotated protein.	Unannotated protein.	0.428
GCA_000738775_00055	GCA_000738775_01598	Unannotated protein.	Unannotated protein.	0.606
GCA_000738775_00055	GCA_000738775_01874	Unannotated protein.	Unannotated protein.	0.782
GCA_000738775_00055	GCA_000738775_02041	Unannotated protein.	Unannotated protein.	0.544
GCA_000738775_00055	GCA_000738775_02127	Unannotated protein.	Unannotated protein.	0.469
GCA_000738775_00055	GCA_000738775_02129	Unannotated protein.	Unannotated protein.	0.644
GCA_000738775_00055	GCA_000738775_02166	Unannotated protein.	Unannotated protein.	0.439
GCA_000738775_00055	GCA_000738775_02798	Unannotated protein.	Unannotated protein.	0.521
GCA_000738775_00055	GCA_000738775_03126	Unannotated protein.	Unannotated protein.	0.400
GCA_000738775_00055	GCA_000738775_03297	Unannotated protein.	Unannotated protein.	0.601
GCA_000738775_00055	GCA_000738775_03952	Unannotated protein.	Unannotated protein.	0.667