(46 nodes) rRNA binding network (Rhodococcus defluvii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000738775_01541	Unannotated protein. (135 aa)
	GCA_000738775_00277	Unannotated protein. (559 aa)
	GCA_000738775_00385	Unannotated protein. (1133 aa)
	GCA_000738775_00470	Unannotated protein. (92 aa)
	GCA_000738775_00471	Unannotated protein. (116 aa)
	GCA_000738775_00571	Unannotated protein. (151 aa)
	GCA_000738775_00572	Unannotated protein. (80 aa)
	GCA_000738775_00574	Unannotated protein. (95 aa)
	GCA_000738775_01425	Unannotated protein. (144 aa)
	GCA_000738775_01426	Unannotated protein. (237 aa)
	GCA_000738775_01427	Unannotated protein. (185 aa)
	GCA_000738775_01459	Unannotated protein. (124 aa)
	GCA_000738775_01460	Unannotated protein. (156 aa)
	GCA_000738775_01525	Unannotated protein. (217 aa)
	GCA_000738775_01526	Unannotated protein. (221 aa)
	GCA_000738775_01527	Unannotated protein. (101 aa)
	GCA_000738775_01528	Unannotated protein. (278 aa)
	GCA_000738775_01529	Unannotated protein. (93 aa)
	GCA_000738775_01530	Unannotated protein. (134 aa)
	GCA_000738775_01531	Unannotated protein. (267 aa)
	GCA_000738775_01532	Unannotated protein. (138 aa)
	GCA_000738775_01534	Unannotated protein. (96 aa)
	GCA_000738775_01535	Unannotated protein. (122 aa)
	GCA_000738775_01536	Unannotated protein. (105 aa)
	GCA_000738775_01537	Unannotated protein. (188 aa)
	GCA_000738775_01538	Unannotated protein. (61 aa)
	GCA_000738775_01539	Unannotated protein. (132 aa)
	GCA_000738775_01540	Unannotated protein. (178 aa)
	GCA_000738775_01542	Unannotated protein. (215 aa)
	GCA_000738775_01544	Unannotated protein. (146 aa)
	GCA_000738775_01549	Unannotated protein. (73 aa)
	GCA_000738775_01551	Unannotated protein. (122 aa)
	GCA_000738775_01552	Unannotated protein. (137 aa)
	GCA_000738775_01553	Unannotated protein. (201 aa)
	GCA_000738775_02053	Unannotated protein. (305 aa)
	GCA_000738775_02087	Unannotated protein. (86 aa)
	GCA_000738775_02112	Unannotated protein. (103 aa)
	GCA_000738775_02154	Unannotated protein. (77 aa)
	GCA_000738775_02729	Unannotated protein. (129 aa)
	GCA_000738775_03637	Unannotated protein. (89 aa)
	GCA_000738775_03735	Unannotated protein. (521 aa)
	GCA_000738775_03816	Unannotated protein. (354 aa)
	GCA_000738775_03868	Unannotated protein. (193 aa)
	GCA_000738775_04096	Unannotated protein. (631 aa)
	GCA_000738775_04467	Unannotated protein. (235 aa)
	GCA_000738775_04522	Unannotated protein. (85 aa)

Your Current Organism:

Rhodococcus defluvii

NCBI taxonomy Id: 1323361
Other names: DSM 45893, LMG 27563, LMG:27563, R. defluvii, Rhodococcus sp. Ca11, strain Ca11

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000738775_00277	GCA_000738775_00571	Unannotated protein.	Unannotated protein.	0.956
GCA_000738775_00277	GCA_000738775_00572	Unannotated protein.	Unannotated protein.	0.898
GCA_000738775_00277	GCA_000738775_00574	Unannotated protein.	Unannotated protein.	0.953
GCA_000738775_00277	GCA_000738775_01425	Unannotated protein.	Unannotated protein.	0.512
GCA_000738775_00277	GCA_000738775_01426	Unannotated protein.	Unannotated protein.	0.987
GCA_000738775_00277	GCA_000738775_01427	Unannotated protein.	Unannotated protein.	0.484
GCA_000738775_00277	GCA_000738775_01459	Unannotated protein.	Unannotated protein.	0.987
GCA_000738775_00277	GCA_000738775_01460	Unannotated protein.	Unannotated protein.	0.955
GCA_000738775_00277	GCA_000738775_01525	Unannotated protein.	Unannotated protein.	0.957
GCA_000738775_00277	GCA_000738775_01526	Unannotated protein.	Unannotated protein.	0.957
GCA_000738775_00277	GCA_000738775_01527	Unannotated protein.	Unannotated protein.	0.956
GCA_000738775_00277	GCA_000738775_01528	Unannotated protein.	Unannotated protein.	0.987
GCA_000738775_00277	GCA_000738775_01529	Unannotated protein.	Unannotated protein.	0.955
GCA_000738775_00277	GCA_000738775_01530	Unannotated protein.	Unannotated protein.	0.953
GCA_000738775_00277	GCA_000738775_01531	Unannotated protein.	Unannotated protein.	0.955
GCA_000738775_00277	GCA_000738775_01532	Unannotated protein.	Unannotated protein.	0.956
GCA_000738775_00277	GCA_000738775_01534	Unannotated protein.	Unannotated protein.	0.953
GCA_000738775_00277	GCA_000738775_01535	Unannotated protein.	Unannotated protein.	0.953
GCA_000738775_00277	GCA_000738775_01536	Unannotated protein.	Unannotated protein.	0.953
GCA_000738775_00277	GCA_000738775_01537	Unannotated protein.	Unannotated protein.	0.987