(5 nodes) Mixed, incl. TPR repeat, and Beta-propeller repeat network (Acinetobacter equi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	bamB	Hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (382 aa)
	ALH94316.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)
	ALH94319.1	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (262 aa)
	ALH96644.1	Pilus assembly protein PilW; Derived by automated computational analysis using gene prediction method: Protein Homology. (247 aa)
	rlmN	23S rRNA (adenine(2503)-C2)-methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family. (411 aa)

Your Current Organism:

Acinetobacter equi

NCBI taxonomy Id: 1324350
Other names: A. equi, Acinetobacter equi Poppel et al. 2016, Acinetobacter sp. 114, CCUG 65204, DSM 27228, strain 114

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALH94316.1	ALH94319.1	AOY20_01475	AOY20_01490	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.825
ALH94316.1	ALH96644.1	AOY20_01475	AOY20_01495	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein PilW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.836
ALH94316.1	bamB	AOY20_01475	AOY20_01470	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.964
ALH94316.1	rlmN	AOY20_01475	AOY20_01500	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	23S rRNA (adenine(2503)-C2)-methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.	0.718
ALH94319.1	ALH94316.1	AOY20_01490	AOY20_01475	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.825
ALH94319.1	ALH96644.1	AOY20_01490	AOY20_01495	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein PilW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.888
ALH94319.1	bamB	AOY20_01490	AOY20_01470	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.795
ALH94319.1	rlmN	AOY20_01490	AOY20_01500	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	23S rRNA (adenine(2503)-C2)-methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.	0.770
ALH96644.1	ALH94316.1	AOY20_01495	AOY20_01475	Pilus assembly protein PilW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.836
ALH96644.1	ALH94319.1	AOY20_01495	AOY20_01490	Pilus assembly protein PilW; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.888
ALH96644.1	bamB	AOY20_01495	AOY20_01470	Pilus assembly protein PilW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.821
ALH96644.1	rlmN	AOY20_01495	AOY20_01500	Pilus assembly protein PilW; Derived by automated computational analysis using gene prediction method: Protein Homology.	23S rRNA (adenine(2503)-C2)-methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.	0.790
bamB	ALH94316.1	AOY20_01470	AOY20_01475	Hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964
bamB	ALH94319.1	AOY20_01470	AOY20_01490	Hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.795
bamB	ALH96644.1	AOY20_01470	AOY20_01495	Hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	Pilus assembly protein PilW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.821
bamB	rlmN	AOY20_01470	AOY20_01500	Hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	23S rRNA (adenine(2503)-C2)-methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.	0.711
rlmN	ALH94316.1	AOY20_01500	AOY20_01475	23S rRNA (adenine(2503)-C2)-methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.718
rlmN	ALH94319.1	AOY20_01500	AOY20_01490	23S rRNA (adenine(2503)-C2)-methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
rlmN	ALH96644.1	AOY20_01500	AOY20_01495	23S rRNA (adenine(2503)-C2)-methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.	Pilus assembly protein PilW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.790
rlmN	bamB	AOY20_01500	AOY20_01470	23S rRNA (adenine(2503)-C2)-methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.	Hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.711