(20 nodes) U2 snRNP network (Rhodnius prolixus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R4FL51_RHOPR	Putative rrm rna recognition motif protein. (124 aa)
	R4FN48_RHOPR	Small nuclear ribonucleoprotein-associated protein. (208 aa)
	R4FPZ8_RHOPR	Putative u1 small nuclear ribonucleoprotein a. (234 aa)
	R4G8I5_RHOPR	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (122 aa)
	R4G8K3_RHOPR	U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family. (157 aa)
	T1HHT0_RHOPR	Uncharacterized protein. (972 aa)
	T1HJP8_RHOPR	Small nuclear ribonucleoprotein G. (76 aa)
	T1HJQ1_RHOPR	Uncharacterized protein. (111 aa)
	T1HNN2_RHOPR	U1 small nuclear ribonucleoprotein 70K. (388 aa)
	T1HR92_RHOPR	RRM domain-containing protein. (216 aa)
	T1HSQ6_RHOPR	Small nuclear ribonucleoprotein Sm D2. (120 aa)
	T1HV23_RHOPR	CPSF_A domain-containing protein. (1208 aa)
	T1I2I1_RHOPR	PSP domain-containing protein. (861 aa)
	T1I2N4_RHOPR	TOG domain-containing protein. (1292 aa)
	T1I3R8_RHOPR	Matrin-type domain-containing protein. (501 aa)
	T1I4A4_RHOPR	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (85 aa)
	T1I4W8_RHOPR	Uncharacterized protein. (271 aa)
	T1I5T8_RHOPR	Uncharacterized protein. (962 aa)
	T1I7P3_RHOPR	Matrin-type domain-containing protein. (269 aa)
	T1IDT6_RHOPR	Small nuclear ribonucleoprotein Sm D3. (151 aa)

Your Current Organism:

Rhodnius prolixus

NCBI taxonomy Id: 13249
Other names: R. prolixus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R4FL51_RHOPR	R4FN48_RHOPR	R4FL51	R4FN48	Putative rrm rna recognition motif protein.	Small nuclear ribonucleoprotein-associated protein.	0.735
R4FL51_RHOPR	R4FPZ8_RHOPR	R4FL51	R4FPZ8	Putative rrm rna recognition motif protein.	Putative u1 small nuclear ribonucleoprotein a.	0.974
R4FL51_RHOPR	R4G8I5_RHOPR	R4FL51	R4G8I5	Putative rrm rna recognition motif protein.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.963
R4FL51_RHOPR	R4G8K3_RHOPR	R4FL51	R4G8K3	Putative rrm rna recognition motif protein.	U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family.	0.734
R4FL51_RHOPR	T1HHT0_RHOPR	R4FL51	T1HHT0	Putative rrm rna recognition motif protein.	Uncharacterized protein.	0.997
R4FL51_RHOPR	T1HJP8_RHOPR	R4FL51	T1HJP8	Putative rrm rna recognition motif protein.	Small nuclear ribonucleoprotein G.	0.978
R4FL51_RHOPR	T1HJQ1_RHOPR	R4FL51	T1HJQ1	Putative rrm rna recognition motif protein.	Uncharacterized protein.	0.995
R4FL51_RHOPR	T1HNN2_RHOPR	R4FL51	T1HNN2	Putative rrm rna recognition motif protein.	U1 small nuclear ribonucleoprotein 70K.	0.422
R4FL51_RHOPR	T1HR92_RHOPR	R4FL51	T1HR92	Putative rrm rna recognition motif protein.	RRM domain-containing protein.	0.977
R4FL51_RHOPR	T1HSQ6_RHOPR	R4FL51	T1HSQ6	Putative rrm rna recognition motif protein.	Small nuclear ribonucleoprotein Sm D2.	0.947
R4FL51_RHOPR	T1HV23_RHOPR	R4FL51	T1HV23	Putative rrm rna recognition motif protein.	CPSF_A domain-containing protein.	0.994
R4FL51_RHOPR	T1I2I1_RHOPR	R4FL51	T1I2I1	Putative rrm rna recognition motif protein.	PSP domain-containing protein.	0.993
R4FL51_RHOPR	T1I2N4_RHOPR	R4FL51	T1I2N4	Putative rrm rna recognition motif protein.	TOG domain-containing protein.	0.994
R4FL51_RHOPR	T1I3R8_RHOPR	R4FL51	T1I3R8	Putative rrm rna recognition motif protein.	Matrin-type domain-containing protein.	0.956
R4FL51_RHOPR	T1I4A4_RHOPR	R4FL51	T1I4A4	Putative rrm rna recognition motif protein.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.992
R4FL51_RHOPR	T1I4W8_RHOPR	R4FL51	T1I4W8	Putative rrm rna recognition motif protein.	Uncharacterized protein.	0.957
R4FL51_RHOPR	T1I5T8_RHOPR	R4FL51	T1I5T8	Putative rrm rna recognition motif protein.	Uncharacterized protein.	0.884
R4FL51_RHOPR	T1I7P3_RHOPR	R4FL51	T1I7P3	Putative rrm rna recognition motif protein.	Matrin-type domain-containing protein.	0.975
R4FL51_RHOPR	T1IDT6_RHOPR	R4FL51	T1IDT6	Putative rrm rna recognition motif protein.	Small nuclear ribonucleoprotein Sm D3.	0.887
R4FN48_RHOPR	R4FL51_RHOPR	R4FN48	R4FL51	Small nuclear ribonucleoprotein-associated protein.	Putative rrm rna recognition motif protein.	0.735