(15 nodes) Sensory organ precursor cell fate determination network (Rhodnius prolixus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T1IF48_RHOPR	Uncharacterized protein. (1541 aa)
	R4G4K8_RHOPR	Putative gtpase. (215 aa)
	T1H8I2_RHOPR	Notch binding. (1224 aa)
	T1HAT4_RHOPR	Uncharacterized protein. (526 aa)
	T1HJ07_RHOPR	Uncharacterized protein. (129 aa)
	T1HNC1_RHOPR	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (320 aa)
	T1HPJ5_RHOPR	Uncharacterized protein. (96 aa)
	T1HTH9_RHOPR	Uncharacterized protein. (637 aa)
	T1I1R3_RHOPR	FIP-RBD domain-containing protein. (278 aa)
	T1HVI8_RHOPR	Uncharacterized protein. (1890 aa)
	T1IFW3_RHOPR	PID domain-containing protein. (623 aa)
	T1IF47_RHOPR	Uncharacterized protein. (259 aa)
	T1IF46_RHOPR	F5/8 type C domain-containing protein. (156 aa)
	T1ID84_RHOPR	Uncharacterized protein. (438 aa)
	T1I3Z5_RHOPR	BHLH domain-containing protein. (202 aa)

Your Current Organism:

Rhodnius prolixus

NCBI taxonomy Id: 13249
Other names: R. prolixus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R4G4K8_RHOPR	T1I1R3_RHOPR	R4G4K8	T1I1R3	Putative gtpase.	FIP-RBD domain-containing protein.	0.987
T1H8I2_RHOPR	T1HVI8_RHOPR	T1H8I2	T1HVI8	Notch binding.	Uncharacterized protein.	0.404
T1H8I2_RHOPR	T1ID84_RHOPR	T1H8I2	T1ID84	Notch binding.	Uncharacterized protein.	0.823
T1H8I2_RHOPR	T1IF46_RHOPR	T1H8I2	T1IF46	Notch binding.	F5/8 type C domain-containing protein.	0.900
T1H8I2_RHOPR	T1IF47_RHOPR	T1H8I2	T1IF47	Notch binding.	Uncharacterized protein.	0.947
T1H8I2_RHOPR	T1IF48_RHOPR	T1H8I2	T1IF48	Notch binding.	Uncharacterized protein.	0.936
T1H8I2_RHOPR	T1IFW3_RHOPR	T1H8I2	T1IFW3	Notch binding.	PID domain-containing protein.	0.525
T1HJ07_RHOPR	T1ID84_RHOPR	T1HJ07	T1ID84	Uncharacterized protein.	Uncharacterized protein.	0.928
T1HNC1_RHOPR	T1ID84_RHOPR	T1HNC1	T1ID84	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Uncharacterized protein.	0.928
T1HPJ5_RHOPR	T1I3Z5_RHOPR	T1HPJ5	T1I3Z5	Uncharacterized protein.	BHLH domain-containing protein.	0.604
T1HTH9_RHOPR	T1IFW3_RHOPR	T1HTH9	T1IFW3	Uncharacterized protein.	PID domain-containing protein.	0.531
T1HVI8_RHOPR	T1H8I2_RHOPR	T1HVI8	T1H8I2	Uncharacterized protein.	Notch binding.	0.404
T1HVI8_RHOPR	T1ID84_RHOPR	T1HVI8	T1ID84	Uncharacterized protein.	Uncharacterized protein.	0.996
T1HVI8_RHOPR	T1IFW3_RHOPR	T1HVI8	T1IFW3	Uncharacterized protein.	PID domain-containing protein.	0.975
T1I1R3_RHOPR	R4G4K8_RHOPR	T1I1R3	R4G4K8	FIP-RBD domain-containing protein.	Putative gtpase.	0.987
T1I3Z5_RHOPR	T1HPJ5_RHOPR	T1I3Z5	T1HPJ5	BHLH domain-containing protein.	Uncharacterized protein.	0.604
T1ID84_RHOPR	T1H8I2_RHOPR	T1ID84	T1H8I2	Uncharacterized protein.	Notch binding.	0.823
T1ID84_RHOPR	T1HJ07_RHOPR	T1ID84	T1HJ07	Uncharacterized protein.	Uncharacterized protein.	0.928
T1ID84_RHOPR	T1HNC1_RHOPR	T1ID84	T1HNC1	Uncharacterized protein.	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.928
T1ID84_RHOPR	T1HVI8_RHOPR	T1ID84	T1HVI8	Uncharacterized protein.	Uncharacterized protein.	0.996