(15 nodes) Cell cycle comprising mitosis without cytokinesis network (Rhodnius prolixus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R4FLD6_RHOPR	Small ubiquitin-related modifier. (94 aa)
	T1HAY2_RHOPR	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family. (393 aa)
	T1IGD4_RHOPR	Rad60-SLD domain-containing protein. (215 aa)
	T1I8X1_RHOPR	Uncharacterized protein. (805 aa)
	T1I8W3_RHOPR	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family. (386 aa)
	T1I8U2_RHOPR	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (866 aa)
	T1HLN7_RHOPR	GTP_cyclohydroI domain-containing protein. (93 aa)
	T1I7G7_RHOPR	Uncharacterized protein. (725 aa)
	T1I6G8_RHOPR	Chromo domain-containing protein. (417 aa)
	T1HYG5_RHOPR	Uncharacterized protein. (747 aa)
	T1HV28_RHOPR	Uncharacterized protein. (415 aa)
	T1HL31_RHOPR	GTP_cyclohydroI domain-containing protein. (263 aa)
	T1HCE1_RHOPR	Uncharacterized protein. (1078 aa)
	T1HKS8_RHOPR	Uncharacterized protein. (321 aa)
	T1HC56_RHOPR	Uncharacterized protein. (594 aa)

Your Current Organism:

Rhodnius prolixus

NCBI taxonomy Id: 13249
Other names: R. prolixus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R4FLD6_RHOPR	T1HC56_RHOPR	R4FLD6	T1HC56	Small ubiquitin-related modifier.	Uncharacterized protein.	0.570
R4FLD6_RHOPR	T1I6G8_RHOPR	R4FLD6	T1I6G8	Small ubiquitin-related modifier.	Chromo domain-containing protein.	0.673
T1HAY2_RHOPR	T1I7G7_RHOPR	T1HAY2	T1I7G7	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein.	0.564
T1HC56_RHOPR	R4FLD6_RHOPR	T1HC56	R4FLD6	Uncharacterized protein.	Small ubiquitin-related modifier.	0.570
T1HC56_RHOPR	T1HKS8_RHOPR	T1HC56	T1HKS8	Uncharacterized protein.	Uncharacterized protein.	0.960
T1HC56_RHOPR	T1HYG5_RHOPR	T1HC56	T1HYG5	Uncharacterized protein.	Uncharacterized protein.	0.853
T1HC56_RHOPR	T1I6G8_RHOPR	T1HC56	T1I6G8	Uncharacterized protein.	Chromo domain-containing protein.	0.973
T1HC56_RHOPR	T1IGD4_RHOPR	T1HC56	T1IGD4	Uncharacterized protein.	Rad60-SLD domain-containing protein.	0.570
T1HCE1_RHOPR	T1HYG5_RHOPR	T1HCE1	T1HYG5	Uncharacterized protein.	Uncharacterized protein.	0.531
T1HCE1_RHOPR	T1I6G8_RHOPR	T1HCE1	T1I6G8	Uncharacterized protein.	Chromo domain-containing protein.	0.526
T1HKS8_RHOPR	T1HC56_RHOPR	T1HKS8	T1HC56	Uncharacterized protein.	Uncharacterized protein.	0.960
T1HKS8_RHOPR	T1HYG5_RHOPR	T1HKS8	T1HYG5	Uncharacterized protein.	Uncharacterized protein.	0.688
T1HKS8_RHOPR	T1I6G8_RHOPR	T1HKS8	T1I6G8	Uncharacterized protein.	Chromo domain-containing protein.	0.955
T1HL31_RHOPR	T1HLN7_RHOPR	T1HL31	T1HLN7	GTP_cyclohydroI domain-containing protein.	GTP_cyclohydroI domain-containing protein.	0.915
T1HLN7_RHOPR	T1HL31_RHOPR	T1HLN7	T1HL31	GTP_cyclohydroI domain-containing protein.	GTP_cyclohydroI domain-containing protein.	0.915
T1HV28_RHOPR	T1I6G8_RHOPR	T1HV28	T1I6G8	Uncharacterized protein.	Chromo domain-containing protein.	0.446
T1HYG5_RHOPR	T1HC56_RHOPR	T1HYG5	T1HC56	Uncharacterized protein.	Uncharacterized protein.	0.853
T1HYG5_RHOPR	T1HCE1_RHOPR	T1HYG5	T1HCE1	Uncharacterized protein.	Uncharacterized protein.	0.531
T1HYG5_RHOPR	T1HKS8_RHOPR	T1HYG5	T1HKS8	Uncharacterized protein.	Uncharacterized protein.	0.688
T1HYG5_RHOPR	T1I6G8_RHOPR	T1HYG5	T1I6G8	Uncharacterized protein.	Chromo domain-containing protein.	0.878