(13 nodes) Dynactin binding network (Rhodnius prolixus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T1I992_RHOPR	Uncharacterized protein. (216 aa)
	T1IAE4_RHOPR	Uncharacterized protein. (181 aa)
	T1IAD2_RHOPR	Uncharacterized protein. (321 aa)
	T1IAD0_RHOPR	Uncharacterized protein. (253 aa)
	T1I993_RHOPR	Uncharacterized protein. (243 aa)
	T1I896_RHOPR	Uncharacterized protein. (96 aa)
	T1I756_RHOPR	AH domain-containing protein. (268 aa)
	T1HY60_RHOPR	TPR_REGION domain-containing protein. (386 aa)
	T1HQW0_RHOPR	Uncharacterized protein. (207 aa)
	T1HJ53_RHOPR	Uncharacterized protein. (279 aa)
	T1HD63_RHOPR	Uncharacterized protein. (94 aa)
	T1H9K1_RHOPR	Uncharacterized protein. (119 aa)
	T1H9D0_RHOPR	Uncharacterized protein. (250 aa)

Your Current Organism:

Rhodnius prolixus

NCBI taxonomy Id: 13249
Other names: R. prolixus

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1H9D0_RHOPR	T1H9K1_RHOPR	T1H9D0	T1H9K1	Uncharacterized protein.	Uncharacterized protein.	0.900
T1H9D0_RHOPR	T1HJ53_RHOPR	T1H9D0	T1HJ53	Uncharacterized protein.	Uncharacterized protein.	0.938
T1H9K1_RHOPR	T1H9D0_RHOPR	T1H9K1	T1H9D0	Uncharacterized protein.	Uncharacterized protein.	0.900
T1H9K1_RHOPR	T1HJ53_RHOPR	T1H9K1	T1HJ53	Uncharacterized protein.	Uncharacterized protein.	0.900
T1HD63_RHOPR	T1I993_RHOPR	T1HD63	T1I993	Uncharacterized protein.	Uncharacterized protein.	0.453
T1HJ53_RHOPR	T1H9D0_RHOPR	T1HJ53	T1H9D0	Uncharacterized protein.	Uncharacterized protein.	0.938
T1HJ53_RHOPR	T1H9K1_RHOPR	T1HJ53	T1H9K1	Uncharacterized protein.	Uncharacterized protein.	0.900
T1HQW0_RHOPR	T1IAD0_RHOPR	T1HQW0	T1IAD0	Uncharacterized protein.	Uncharacterized protein.	0.558
T1HQW0_RHOPR	T1IAD2_RHOPR	T1HQW0	T1IAD2	Uncharacterized protein.	Uncharacterized protein.	0.928
T1I992_RHOPR	T1I993_RHOPR	T1I992	T1I993	Uncharacterized protein.	Uncharacterized protein.	0.680
T1I993_RHOPR	T1HD63_RHOPR	T1I993	T1HD63	Uncharacterized protein.	Uncharacterized protein.	0.453
T1I993_RHOPR	T1I992_RHOPR	T1I993	T1I992	Uncharacterized protein.	Uncharacterized protein.	0.680
T1IAD0_RHOPR	T1HQW0_RHOPR	T1IAD0	T1HQW0	Uncharacterized protein.	Uncharacterized protein.	0.558
T1IAD2_RHOPR	T1HQW0_RHOPR	T1IAD2	T1HQW0	Uncharacterized protein.	Uncharacterized protein.	0.928