(31 nodes) Vesicle docking network (Rhodnius prolixus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T1IBU7_RHOPR	Uncharacterized protein. (330 aa)
	T1I3P1_RHOPR	Sec8_exocyst domain-containing protein. (965 aa)
	T1I3I6_RHOPR	t-SNARE coiled-coil homology domain-containing protein. (100 aa)
	T1I0N6_RHOPR	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family. (890 aa)
	T1I0J8_RHOPR	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (254 aa)
	T1HX54_RHOPR	Uncharacterized protein. (104 aa)
	T1HWW8_RHOPR	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (238 aa)
	T1HVK6_RHOPR	Pep3_Vps18 domain-containing protein. (962 aa)
	T1HUU0_RHOPR	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (255 aa)
	T1HTS6_RHOPR	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (257 aa)
	T1HRQ9_RHOPR	Uso1_p115_head domain-containing protein. (703 aa)
	T1HLC4_RHOPR	Uncharacterized protein. (1052 aa)
	T1HGY8_RHOPR	Uncharacterized protein. (698 aa)
	T1HEL5_RHOPR	SynN domain-containing protein. (114 aa)
	T1HCJ4_RHOPR	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. (556 aa)
	T1HCJ3_RHOPR	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. (66 aa)
	T1HA05_RHOPR	Phorbol-ester/DAG-type domain-containing protein. (1833 aa)
	R4G8M2_RHOPR	Putative rab-protein 10. (200 aa)
	R4G4E1_RHOPR	Putative vesicle-associated membrane protein 2. (117 aa)
	R4FN98_RHOPR	Putative syntaxin-8. (230 aa)
	T1I461_RHOPR	Uncharacterized protein. (89 aa)
	T1I652_RHOPR	RING-type domain-containing protein. (845 aa)
	T1I6U3_RHOPR	PH domain-containing protein. (682 aa)
	T1I7S0_RHOPR	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (302 aa)
	T1I8Q3_RHOPR	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (588 aa)
	T1I8W4_RHOPR	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (311 aa)
	T1I9P2_RHOPR	Uncharacterized protein. (463 aa)
	T1IAP1_RHOPR	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (582 aa)
	T1IBN5_RHOPR	Uncharacterized protein. (306 aa)
	T1IBU9_RHOPR	t-SNARE coiled-coil homology domain-containing protein. (328 aa)
	T1IC95_RHOPR	Uncharacterized protein. (206 aa)

Your Current Organism:

Rhodnius prolixus

NCBI taxonomy Id: 13249
Other names: R. prolixus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R4FN98_RHOPR	R4G4E1_RHOPR	R4FN98	R4G4E1	Putative syntaxin-8.	Putative vesicle-associated membrane protein 2.	0.965
R4FN98_RHOPR	T1HEL5_RHOPR	R4FN98	T1HEL5	Putative syntaxin-8.	SynN domain-containing protein.	0.727
R4FN98_RHOPR	T1HTS6_RHOPR	R4FN98	T1HTS6	Putative syntaxin-8.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.975
R4FN98_RHOPR	T1HUU0_RHOPR	R4FN98	T1HUU0	Putative syntaxin-8.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.828
R4FN98_RHOPR	T1HVK6_RHOPR	R4FN98	T1HVK6	Putative syntaxin-8.	Pep3_Vps18 domain-containing protein.	0.922
R4FN98_RHOPR	T1HWW8_RHOPR	R4FN98	T1HWW8	Putative syntaxin-8.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.651
R4FN98_RHOPR	T1I0J8_RHOPR	R4FN98	T1I0J8	Putative syntaxin-8.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.996
R4FN98_RHOPR	T1I3I6_RHOPR	R4FN98	T1I3I6	Putative syntaxin-8.	t-SNARE coiled-coil homology domain-containing protein.	0.727
R4FN98_RHOPR	T1I461_RHOPR	R4FN98	T1I461	Putative syntaxin-8.	Uncharacterized protein.	0.727
R4FN98_RHOPR	T1I652_RHOPR	R4FN98	T1I652	Putative syntaxin-8.	RING-type domain-containing protein.	0.921
R4FN98_RHOPR	T1I7S0_RHOPR	R4FN98	T1I7S0	Putative syntaxin-8.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.600
R4FN98_RHOPR	T1I8W4_RHOPR	R4FN98	T1I8W4	Putative syntaxin-8.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.953
R4FN98_RHOPR	T1IBU9_RHOPR	R4FN98	T1IBU9	Putative syntaxin-8.	t-SNARE coiled-coil homology domain-containing protein.	0.984
R4G4E1_RHOPR	R4FN98_RHOPR	R4G4E1	R4FN98	Putative vesicle-associated membrane protein 2.	Putative syntaxin-8.	0.965
R4G4E1_RHOPR	R4G8M2_RHOPR	R4G4E1	R4G8M2	Putative vesicle-associated membrane protein 2.	Putative rab-protein 10.	0.633
R4G4E1_RHOPR	T1HA05_RHOPR	R4G4E1	T1HA05	Putative vesicle-associated membrane protein 2.	Phorbol-ester/DAG-type domain-containing protein.	0.741
R4G4E1_RHOPR	T1HCJ3_RHOPR	R4G4E1	T1HCJ3	Putative vesicle-associated membrane protein 2.	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.436
R4G4E1_RHOPR	T1HCJ4_RHOPR	R4G4E1	T1HCJ4	Putative vesicle-associated membrane protein 2.	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.436
R4G4E1_RHOPR	T1HEL5_RHOPR	R4G4E1	T1HEL5	Putative vesicle-associated membrane protein 2.	SynN domain-containing protein.	0.964
R4G4E1_RHOPR	T1HGY8_RHOPR	R4G4E1	T1HGY8	Putative vesicle-associated membrane protein 2.	Uncharacterized protein.	0.588