(9 nodes) Localization of cell network (Rhodnius prolixus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R4FKD6_RHOPR	Checkpoint protein; Belongs to the HUS1 family. (276 aa)
	R4G3V0_RHOPR	Putative rna-binding protein musashi/mrna cleavage and polyadenylation factor i complex. (265 aa)
	T1H8N0_RHOPR	RECA_2 domain-containing protein. (279 aa)
	T1HDI6_RHOPR	Uncharacterized protein. (1552 aa)
	T1HVI8_RHOPR	Uncharacterized protein. (1890 aa)
	T1HWK9_RHOPR	Supernumerary limbs. (509 aa)
	T1I475_RHOPR	Glyco_trans_2-like domain-containing protein. (458 aa)
	T1I9L1_RHOPR	Uncharacterized protein. (643 aa)
	T1I9M6_RHOPR	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (702 aa)

Your Current Organism:

Rhodnius prolixus

NCBI taxonomy Id: 13249
Other names: R. prolixus

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R4FKD6_RHOPR	T1H8N0_RHOPR	R4FKD6	T1H8N0	Checkpoint protein; Belongs to the HUS1 family.	RECA_2 domain-containing protein.	0.520
T1H8N0_RHOPR	R4FKD6_RHOPR	T1H8N0	R4FKD6	RECA_2 domain-containing protein.	Checkpoint protein; Belongs to the HUS1 family.	0.520
T1HDI6_RHOPR	T1HWK9_RHOPR	T1HDI6	T1HWK9	Uncharacterized protein.	Supernumerary limbs.	0.822
T1HVI8_RHOPR	T1I9M6_RHOPR	T1HVI8	T1I9M6	Uncharacterized protein.	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	0.995
T1HWK9_RHOPR	T1HDI6_RHOPR	T1HWK9	T1HDI6	Supernumerary limbs.	Uncharacterized protein.	0.822
T1I9M6_RHOPR	T1HVI8_RHOPR	T1I9M6	T1HVI8	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	Uncharacterized protein.	0.995