(13 nodes) Synaptic vesicle endosomal processing network (Rhodnius prolixus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T1IB66_RHOPR	SAC domain-containing protein. (864 aa)
	T1I8U2_RHOPR	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (866 aa)
	T1I849_RHOPR	Uncharacterized protein. (380 aa)
	T1I1E6_RHOPR	Uncharacterized protein. (401 aa)
	T1HDJ9_RHOPR	ENTH domain-containing protein. (707 aa)
	T1HDB7_RHOPR	Uncharacterized protein. (192 aa)
	T1HB01_RHOPR	TLDc domain-containing protein. (144 aa)
	T1HAI0_RHOPR	Uncharacterized protein. (307 aa)
	T1HAH9_RHOPR	Uncharacterized protein. (1039 aa)
	R4FPV9_RHOPR	Putative small gtp binding protein rab5. (213 aa)
	T1IFU4_RHOPR	ENTH domain-containing protein. (59 aa)
	T1IF88_RHOPR	Uncharacterized protein. (96 aa)
	T1IAL4_RHOPR	Biogenesis of lysosome-related organelles complex 1 subunit 6; Component of the biogenesis of lysosome-related organelles complex-1 (BLOC-1) involved in pigment granule biogenesis. (133 aa)

Your Current Organism:

Rhodnius prolixus

NCBI taxonomy Id: 13249
Other names: R. prolixus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R4FPV9_RHOPR	T1HDJ9_RHOPR	R4FPV9	T1HDJ9	Putative small gtp binding protein rab5.	ENTH domain-containing protein.	0.496
R4FPV9_RHOPR	T1I849_RHOPR	R4FPV9	T1I849	Putative small gtp binding protein rab5.	Uncharacterized protein.	0.702
R4FPV9_RHOPR	T1I8U2_RHOPR	R4FPV9	T1I8U2	Putative small gtp binding protein rab5.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.735
R4FPV9_RHOPR	T1IAL4_RHOPR	R4FPV9	T1IAL4	Putative small gtp binding protein rab5.	Biogenesis of lysosome-related organelles complex 1 subunit 6; Component of the biogenesis of lysosome-related organelles complex-1 (BLOC-1) involved in pigment granule biogenesis.	0.491
R4FPV9_RHOPR	T1IF88_RHOPR	R4FPV9	T1IF88	Putative small gtp binding protein rab5.	Uncharacterized protein.	0.565
R4FPV9_RHOPR	T1IFU4_RHOPR	R4FPV9	T1IFU4	Putative small gtp binding protein rab5.	ENTH domain-containing protein.	0.496
T1HAH9_RHOPR	T1HAI0_RHOPR	T1HAH9	T1HAI0	Uncharacterized protein.	Uncharacterized protein.	0.901
T1HAH9_RHOPR	T1HDJ9_RHOPR	T1HAH9	T1HDJ9	Uncharacterized protein.	ENTH domain-containing protein.	0.986
T1HAH9_RHOPR	T1I1E6_RHOPR	T1HAH9	T1I1E6	Uncharacterized protein.	Uncharacterized protein.	0.694
T1HAH9_RHOPR	T1I849_RHOPR	T1HAH9	T1I849	Uncharacterized protein.	Uncharacterized protein.	0.505
T1HAH9_RHOPR	T1I8U2_RHOPR	T1HAH9	T1I8U2	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.941
T1HAH9_RHOPR	T1IB66_RHOPR	T1HAH9	T1IB66	Uncharacterized protein.	SAC domain-containing protein.	0.947
T1HAH9_RHOPR	T1IFU4_RHOPR	T1HAH9	T1IFU4	Uncharacterized protein.	ENTH domain-containing protein.	0.986
T1HAI0_RHOPR	T1HAH9_RHOPR	T1HAI0	T1HAH9	Uncharacterized protein.	Uncharacterized protein.	0.901
T1HAI0_RHOPR	T1HDJ9_RHOPR	T1HAI0	T1HDJ9	Uncharacterized protein.	ENTH domain-containing protein.	0.736
T1HAI0_RHOPR	T1I1E6_RHOPR	T1HAI0	T1I1E6	Uncharacterized protein.	Uncharacterized protein.	0.658
T1HAI0_RHOPR	T1I8U2_RHOPR	T1HAI0	T1I8U2	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.945
T1HAI0_RHOPR	T1IB66_RHOPR	T1HAI0	T1IB66	Uncharacterized protein.	SAC domain-containing protein.	0.818
T1HAI0_RHOPR	T1IFU4_RHOPR	T1HAI0	T1IFU4	Uncharacterized protein.	ENTH domain-containing protein.	0.736
T1HDJ9_RHOPR	R4FPV9_RHOPR	T1HDJ9	R4FPV9	ENTH domain-containing protein.	Putative small gtp binding protein rab5.	0.496