(24 nodes) 50S ribosome-binding GTPase network (Rhodnius prolixus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T1HV40_RHOPR	Tr-type G domain-containing protein. (540 aa)
	T1I6P3_RHOPR	OBG-type G domain-containing protein. (631 aa)
	T1I768_RHOPR	Tr-type G domain-containing protein. (605 aa)
	T1IAW0_RHOPR	Hflx-type G domain-containing protein. (419 aa)
	T1ICJ4_RHOPR	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (635 aa)
	T1IFA6_RHOPR	CP-type G domain-containing protein. (561 aa)
	R4FNN5_RHOPR	Putative gtp-binding protein drg1 odn superfamily. (367 aa)
	R4G4B2_RHOPR	Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. (310 aa)
	R4G4S6_RHOPR	Putative gtp-binding protein drg2 odn superfamily. (363 aa)
	R4G7U3_RHOPR	Putative gtp-binding protein odn superfamily. (371 aa)
	T1H9U6_RHOPR	EngB-type G domain-containing protein. (221 aa)
	T1HBN6_RHOPR	Tr-type G domain-containing protein. (992 aa)
	T1HBR5_RHOPR	CP-type G domain-containing protein. (568 aa)
	T1HDB1_RHOPR	OBG-type G domain-containing protein. (536 aa)
	T1HDM2_RHOPR	Tr-type G domain-containing protein. (844 aa)
	T1HFW5_RHOPR	CP-type G domain-containing protein. (512 aa)
	T1HIU7_RHOPR	Septin-type G domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (429 aa)
	T1HK56_RHOPR	Septin-type G domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (404 aa)
	T1HKY6_RHOPR	OBG-type G domain-containing protein. (319 aa)
	T1HMS7_RHOPR	Tr-type G domain-containing protein. (398 aa)
	T1HMV8_RHOPR	G domain-containing protein. (708 aa)
	T1HN81_RHOPR	Tr-type G domain-containing protein. (619 aa)
	T1HNV3_RHOPR	Uncharacterized protein. (231 aa)
	T1HPX1_RHOPR	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (489 aa)

Your Current Organism:

Rhodnius prolixus

NCBI taxonomy Id: 13249
Other names: R. prolixus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R4FNN5_RHOPR	R4G4S6_RHOPR	R4FNN5	R4G4S6	Putative gtp-binding protein drg1 odn superfamily.	Putative gtp-binding protein drg2 odn superfamily.	0.766
R4FNN5_RHOPR	T1HBN6_RHOPR	R4FNN5	T1HBN6	Putative gtp-binding protein drg1 odn superfamily.	Tr-type G domain-containing protein.	0.410
R4FNN5_RHOPR	T1HPX1_RHOPR	R4FNN5	T1HPX1	Putative gtp-binding protein drg1 odn superfamily.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.506
R4G4B2_RHOPR	R4G7U3_RHOPR	R4G4B2	R4G7U3	Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	Putative gtp-binding protein odn superfamily.	0.589
R4G4B2_RHOPR	T1H9U6_RHOPR	R4G4B2	T1H9U6	Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	EngB-type G domain-containing protein.	0.961
R4G4B2_RHOPR	T1HBR5_RHOPR	R4G4B2	T1HBR5	Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	CP-type G domain-containing protein.	0.413
R4G4B2_RHOPR	T1HDB1_RHOPR	R4G4B2	T1HDB1	Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	OBG-type G domain-containing protein.	0.800
R4G4B2_RHOPR	T1HFW5_RHOPR	R4G4B2	T1HFW5	Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	CP-type G domain-containing protein.	0.524
R4G4B2_RHOPR	T1HMS7_RHOPR	R4G4B2	T1HMS7	Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	Tr-type G domain-containing protein.	0.688
R4G4B2_RHOPR	T1I6P3_RHOPR	R4G4B2	T1I6P3	Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	OBG-type G domain-containing protein.	0.800
R4G4B2_RHOPR	T1ICJ4_RHOPR	R4G4B2	T1ICJ4	Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.885
R4G4B2_RHOPR	T1IFA6_RHOPR	R4G4B2	T1IFA6	Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	CP-type G domain-containing protein.	0.401
R4G4S6_RHOPR	R4FNN5_RHOPR	R4G4S6	R4FNN5	Putative gtp-binding protein drg2 odn superfamily.	Putative gtp-binding protein drg1 odn superfamily.	0.766
R4G4S6_RHOPR	T1HBN6_RHOPR	R4G4S6	T1HBN6	Putative gtp-binding protein drg2 odn superfamily.	Tr-type G domain-containing protein.	0.595
R4G7U3_RHOPR	R4G4B2_RHOPR	R4G7U3	R4G4B2	Putative gtp-binding protein odn superfamily.	Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	0.589
R4G7U3_RHOPR	T1H9U6_RHOPR	R4G7U3	T1H9U6	Putative gtp-binding protein odn superfamily.	EngB-type G domain-containing protein.	0.432
R4G7U3_RHOPR	T1HBN6_RHOPR	R4G7U3	T1HBN6	Putative gtp-binding protein odn superfamily.	Tr-type G domain-containing protein.	0.553
R4G7U3_RHOPR	T1HKY6_RHOPR	R4G7U3	T1HKY6	Putative gtp-binding protein odn superfamily.	OBG-type G domain-containing protein.	0.451
R4G7U3_RHOPR	T1HMS7_RHOPR	R4G7U3	T1HMS7	Putative gtp-binding protein odn superfamily.	Tr-type G domain-containing protein.	0.495
R4G7U3_RHOPR	T1HMV8_RHOPR	R4G7U3	T1HMV8	Putative gtp-binding protein odn superfamily.	G domain-containing protein.	0.519