(22 nodes) K homology RNA-binding domain network (Rhodnius prolixus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T1I7U1_RHOPR	40S ribosomal protein S3. (199 aa)
	R4G7Y5_RHOPR	Putative rna-binding protein pno1p. (229 aa)
	R4G807_RHOPR	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (337 aa)
	T1H969_RHOPR	RRM domain-containing protein. (577 aa)
	T1HBK8_RHOPR	KH domain-containing protein. (358 aa)
	T1HC51_RHOPR	Uncharacterized protein. (457 aa)
	T1HGV2_RHOPR	Uncharacterized protein. (455 aa)
	T1HHC2_RHOPR	KH domain-containing protein. (75 aa)
	T1HNH5_RHOPR	Uncharacterized protein. (453 aa)
	T1HS90_RHOPR	Uncharacterized protein. (441 aa)
	T1HTA9_RHOPR	KH domain-containing protein. (284 aa)
	T1HTB0_RHOPR	Uncharacterized protein. (270 aa)
	T1HTQ9_RHOPR	Uncharacterized protein. (445 aa)
	T1HX41_RHOPR	S1 motif domain-containing protein. (226 aa)
	T1HXG5_RHOPR	Uncharacterized protein. (367 aa)
	T1HZ74_RHOPR	KH_dom_type_1 domain-containing protein. (260 aa)
	T1I012_RHOPR	Uncharacterized protein. (986 aa)
	T1I0B8_RHOPR	ANK_REP_REGION domain-containing protein. (2188 aa)
	T1I405_RHOPR	KH_dom_type_1 domain-containing protein. (152 aa)
	T1I628_RHOPR	RING-type domain-containing protein. (332 aa)
	T1IB41_RHOPR	Uncharacterized protein. (347 aa)
	T1IBV3_RHOPR	Uncharacterized protein. (537 aa)

Your Current Organism:

Rhodnius prolixus

NCBI taxonomy Id: 13249
Other names: R. prolixus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R4G7Y5_RHOPR	R4G807_RHOPR	R4G7Y5	R4G807	Putative rna-binding protein pno1p.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.946
R4G7Y5_RHOPR	T1I7U1_RHOPR	R4G7Y5	T1I7U1	Putative rna-binding protein pno1p.	40S ribosomal protein S3.	0.882
R4G807_RHOPR	R4G7Y5_RHOPR	R4G807	R4G7Y5	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Putative rna-binding protein pno1p.	0.946
R4G807_RHOPR	T1I7U1_RHOPR	R4G807	T1I7U1	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	40S ribosomal protein S3.	0.903
T1H969_RHOPR	T1HGV2_RHOPR	T1H969	T1HGV2	RRM domain-containing protein.	Uncharacterized protein.	0.419
T1HBK8_RHOPR	T1HS90_RHOPR	T1HBK8	T1HS90	KH domain-containing protein.	Uncharacterized protein.	0.437
T1HBK8_RHOPR	T1IB41_RHOPR	T1HBK8	T1IB41	KH domain-containing protein.	Uncharacterized protein.	0.550
T1HC51_RHOPR	T1HGV2_RHOPR	T1HC51	T1HGV2	Uncharacterized protein.	Uncharacterized protein.	0.665
T1HGV2_RHOPR	T1H969_RHOPR	T1HGV2	T1H969	Uncharacterized protein.	RRM domain-containing protein.	0.419
T1HGV2_RHOPR	T1HC51_RHOPR	T1HGV2	T1HC51	Uncharacterized protein.	Uncharacterized protein.	0.665
T1HGV2_RHOPR	T1HHC2_RHOPR	T1HGV2	T1HHC2	Uncharacterized protein.	KH domain-containing protein.	0.419
T1HGV2_RHOPR	T1HS90_RHOPR	T1HGV2	T1HS90	Uncharacterized protein.	Uncharacterized protein.	0.457
T1HGV2_RHOPR	T1HZ74_RHOPR	T1HGV2	T1HZ74	Uncharacterized protein.	KH_dom_type_1 domain-containing protein.	0.403
T1HGV2_RHOPR	T1I012_RHOPR	T1HGV2	T1I012	Uncharacterized protein.	Uncharacterized protein.	0.525
T1HGV2_RHOPR	T1IB41_RHOPR	T1HGV2	T1IB41	Uncharacterized protein.	Uncharacterized protein.	0.876
T1HHC2_RHOPR	T1HGV2_RHOPR	T1HHC2	T1HGV2	KH domain-containing protein.	Uncharacterized protein.	0.419
T1HNH5_RHOPR	T1IB41_RHOPR	T1HNH5	T1IB41	Uncharacterized protein.	Uncharacterized protein.	0.418
T1HS90_RHOPR	T1HBK8_RHOPR	T1HS90	T1HBK8	Uncharacterized protein.	KH domain-containing protein.	0.437
T1HS90_RHOPR	T1HGV2_RHOPR	T1HS90	T1HGV2	Uncharacterized protein.	Uncharacterized protein.	0.457
T1HS90_RHOPR	T1HZ74_RHOPR	T1HS90	T1HZ74	Uncharacterized protein.	KH_dom_type_1 domain-containing protein.	0.755