(36 nodes) Retinol metabolism network (Rhodnius prolixus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T1HJB7_RHOPR	Uncharacterized protein. (115 aa)
	T1HID0_RHOPR	O-acyltransferase. (484 aa)
	T1HFU6_RHOPR	Uncharacterized protein. (518 aa)
	T1HCI1_RHOPR	Uncharacterized protein. (327 aa)
	T1HB12_RHOPR	Tim44 domain-containing protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (400 aa)
	T1H855_RHOPR	Uncharacterized protein. (287 aa)
	R4G8T3_RHOPR	UDP-glucuronosyltransferase; Belongs to the UDP-glycosyltransferase family. (528 aa)
	R4G4U8_RHOPR	S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily. (378 aa)
	R4FKX3_RHOPR	Putative short chain dehydrogenase. (338 aa)
	R4FKX0_RHOPR	Putative short chain dehydrogenase. (319 aa)
	T1HKK9_RHOPR	UDP-glucuronosyltransferase; Belongs to the UDP-glycosyltransferase family. (518 aa)
	T1IAZ1_RHOPR	Uncharacterized protein. (386 aa)
	T1IBK9_RHOPR	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (306 aa)
	T1ICC1_RHOPR	Uncharacterized protein. (762 aa)
	T1IFF6_RHOPR	UDP-glucuronosyltransferase; Belongs to the UDP-glycosyltransferase family. (374 aa)
	T1IFG0_RHOPR	UDP-glucuronosyltransferase; Belongs to the UDP-glycosyltransferase family. (529 aa)
	T1IFG1_RHOPR	UDP-glucuronosyltransferase; Belongs to the UDP-glycosyltransferase family. (487 aa)
	T1IFG2_RHOPR	UDP-glucuronosyltransferase; Belongs to the UDP-glycosyltransferase family. (383 aa)
	T1IFG3_RHOPR	Uncharacterized protein; Belongs to the UDP-glycosyltransferase family. (1380 aa)
	T1IAY6_RHOPR	Uncharacterized protein. (486 aa)
	T1I8W8_RHOPR	Uncharacterized protein. (325 aa)
	T1HJN8_RHOPR	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (256 aa)
	T1I8P0_RHOPR	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (196 aa)
	T1I7Z2_RHOPR	Uncharacterized protein. (338 aa)
	T1I5V0_RHOPR	Uncharacterized protein. (446 aa)
	T1I4Q4_RHOPR	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (328 aa)
	T1I2T5_RHOPR	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (190 aa)
	T1I140_RHOPR	Uncharacterized protein. (552 aa)
	T1HZU4_RHOPR	Uncharacterized protein. (256 aa)
	T1HZU1_RHOPR	UDPGT domain-containing protein; Belongs to the UDP-glycosyltransferase family. (963 aa)
	T1HW41_RHOPR	Uncharacterized protein. (96 aa)
	T1HW39_RHOPR	Uncharacterized protein. (169 aa)
	T1HR25_RHOPR	Uncharacterized protein. (212 aa)
	T1HNX1_RHOPR	Uncharacterized protein. (409 aa)
	T1HLB4_RHOPR	Uncharacterized protein. (242 aa)
	T1HLB3_RHOPR	Uncharacterized protein. (91 aa)

Your Current Organism:

Rhodnius prolixus

NCBI taxonomy Id: 13249
Other names: R. prolixus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R4FKX0_RHOPR	R4FKX3_RHOPR	R4FKX0	R4FKX3	Putative short chain dehydrogenase.	Putative short chain dehydrogenase.	0.611
R4FKX0_RHOPR	R4G4U8_RHOPR	R4FKX0	R4G4U8	Putative short chain dehydrogenase.	S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	0.887
R4FKX0_RHOPR	T1HB12_RHOPR	R4FKX0	T1HB12	Putative short chain dehydrogenase.	Tim44 domain-containing protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.896
R4FKX0_RHOPR	T1HCI1_RHOPR	R4FKX0	T1HCI1	Putative short chain dehydrogenase.	Uncharacterized protein.	0.889
R4FKX0_RHOPR	T1HID0_RHOPR	R4FKX0	T1HID0	Putative short chain dehydrogenase.	O-acyltransferase.	0.906
R4FKX0_RHOPR	T1HLB3_RHOPR	R4FKX0	T1HLB3	Putative short chain dehydrogenase.	Uncharacterized protein.	0.597
R4FKX0_RHOPR	T1HLB4_RHOPR	R4FKX0	T1HLB4	Putative short chain dehydrogenase.	Uncharacterized protein.	0.608
R4FKX0_RHOPR	T1HZU4_RHOPR	R4FKX0	T1HZU4	Putative short chain dehydrogenase.	Uncharacterized protein.	0.887
R4FKX0_RHOPR	T1I140_RHOPR	R4FKX0	T1I140	Putative short chain dehydrogenase.	Uncharacterized protein.	0.405
R4FKX0_RHOPR	T1I2T5_RHOPR	R4FKX0	T1I2T5	Putative short chain dehydrogenase.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.900
R4FKX0_RHOPR	T1I4Q4_RHOPR	R4FKX0	T1I4Q4	Putative short chain dehydrogenase.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.646
R4FKX0_RHOPR	T1I5V0_RHOPR	R4FKX0	T1I5V0	Putative short chain dehydrogenase.	Uncharacterized protein.	0.405
R4FKX0_RHOPR	T1I7Z2_RHOPR	R4FKX0	T1I7Z2	Putative short chain dehydrogenase.	Uncharacterized protein.	0.621
R4FKX3_RHOPR	R4FKX0_RHOPR	R4FKX3	R4FKX0	Putative short chain dehydrogenase.	Putative short chain dehydrogenase.	0.611
R4FKX3_RHOPR	R4G4U8_RHOPR	R4FKX3	R4G4U8	Putative short chain dehydrogenase.	S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	0.452
R4FKX3_RHOPR	T1HID0_RHOPR	R4FKX3	T1HID0	Putative short chain dehydrogenase.	O-acyltransferase.	0.645
R4FKX3_RHOPR	T1HZU4_RHOPR	R4FKX3	T1HZU4	Putative short chain dehydrogenase.	Uncharacterized protein.	0.452
R4FKX3_RHOPR	T1I140_RHOPR	R4FKX3	T1I140	Putative short chain dehydrogenase.	Uncharacterized protein.	0.456
R4FKX3_RHOPR	T1I2T5_RHOPR	R4FKX3	T1I2T5	Putative short chain dehydrogenase.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.612
R4FKX3_RHOPR	T1I5V0_RHOPR	R4FKX3	T1I5V0	Putative short chain dehydrogenase.	Uncharacterized protein.	0.456