(13 nodes) Circadian rhythm - fly network (Rhodnius prolixus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T1HVD8_RHOPR	Timeless. (888 aa)
	T1HUX3_RHOPR	Protein kinase domain-containing protein. (378 aa)
	T1HSI0_RHOPR	Uncharacterized protein. (154 aa)
	T1HLT2_RHOPR	BZIP domain-containing protein. (613 aa)
	T1HDJ0_RHOPR	Circadian locomoter output cycles protein kaput (clock). (582 aa)
	T1HA84_RHOPR	Ataxin. (944 aa)
	T1H956_RHOPR	Cycle. (700 aa)
	T1H8S8_RHOPR	Period. (924 aa)
	T1H8P6_RHOPR	Vrille. (400 aa)
	T1H8J1_RHOPR	Protein kinase shaggy; Belongs to the protein kinase superfamily. (455 aa)
	T1H898_RHOPR	PAR-domain protein 1. (300 aa)
	T1H831_RHOPR	Double-time; Belongs to the protein kinase superfamily. (359 aa)
	T1I4W4_RHOPR	AD domain-containing protein. (192 aa)

Your Current Organism:

Rhodnius prolixus

NCBI taxonomy Id: 13249
Other names: R. prolixus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1H831_RHOPR	T1H898_RHOPR	T1H831	T1H898	Double-time; Belongs to the protein kinase superfamily.	PAR-domain protein 1.	0.687
T1H831_RHOPR	T1H8J1_RHOPR	T1H831	T1H8J1	Double-time; Belongs to the protein kinase superfamily.	Protein kinase shaggy; Belongs to the protein kinase superfamily.	0.826
T1H831_RHOPR	T1H8P6_RHOPR	T1H831	T1H8P6	Double-time; Belongs to the protein kinase superfamily.	Vrille.	0.748
T1H831_RHOPR	T1H8S8_RHOPR	T1H831	T1H8S8	Double-time; Belongs to the protein kinase superfamily.	Period.	0.990
T1H831_RHOPR	T1H956_RHOPR	T1H831	T1H956	Double-time; Belongs to the protein kinase superfamily.	Cycle.	0.974
T1H831_RHOPR	T1HDJ0_RHOPR	T1H831	T1HDJ0	Double-time; Belongs to the protein kinase superfamily.	Circadian locomoter output cycles protein kaput (clock).	0.931
T1H831_RHOPR	T1HSI0_RHOPR	T1H831	T1HSI0	Double-time; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.931
T1H831_RHOPR	T1HUX3_RHOPR	T1H831	T1HUX3	Double-time; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein.	0.826
T1H831_RHOPR	T1HVD8_RHOPR	T1H831	T1HVD8	Double-time; Belongs to the protein kinase superfamily.	Timeless.	0.938
T1H898_RHOPR	T1H831_RHOPR	T1H898	T1H831	PAR-domain protein 1.	Double-time; Belongs to the protein kinase superfamily.	0.687
T1H898_RHOPR	T1H8P6_RHOPR	T1H898	T1H8P6	PAR-domain protein 1.	Vrille.	0.775
T1H898_RHOPR	T1H8S8_RHOPR	T1H898	T1H8S8	PAR-domain protein 1.	Period.	0.656
T1H898_RHOPR	T1H956_RHOPR	T1H898	T1H956	PAR-domain protein 1.	Cycle.	0.777
T1H898_RHOPR	T1HDJ0_RHOPR	T1H898	T1HDJ0	PAR-domain protein 1.	Circadian locomoter output cycles protein kaput (clock).	0.501
T1H898_RHOPR	T1HVD8_RHOPR	T1H898	T1HVD8	PAR-domain protein 1.	Timeless.	0.585
T1H8J1_RHOPR	T1H831_RHOPR	T1H8J1	T1H831	Protein kinase shaggy; Belongs to the protein kinase superfamily.	Double-time; Belongs to the protein kinase superfamily.	0.826
T1H8J1_RHOPR	T1HVD8_RHOPR	T1H8J1	T1HVD8	Protein kinase shaggy; Belongs to the protein kinase superfamily.	Timeless.	0.920
T1H8P6_RHOPR	T1H831_RHOPR	T1H8P6	T1H831	Vrille.	Double-time; Belongs to the protein kinase superfamily.	0.748
T1H8P6_RHOPR	T1H898_RHOPR	T1H8P6	T1H898	Vrille.	PAR-domain protein 1.	0.775
T1H8P6_RHOPR	T1H8S8_RHOPR	T1H8P6	T1H8S8	Vrille.	Period.	0.831