10 items (Streptococcus acidominimus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OLF49159.1	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (247 aa)
	vicR	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)
	OLF49309.1	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (425 aa)
	OLF49604.1	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)
	OLF49650.1	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (199 aa)
	OLF49922.1	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)
	OLF50015.1	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (230 aa)
	OLF50322.1	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)
	arlR_3	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)
	OLF50790.1	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)

Your Current Organism:

Streptococcus acidominimus

NCBI taxonomy Id: 1326
Other names: ATCC 51725, CCUG 27296, CIP 82.4, DSM 20622, LMG 17755, LMG:17755, NCDO 2025, NCIMB 702025, NCTC 12957, S. acidominimus

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OLF49159.1	OLF49922.1	BU200_08810	BU200_04930	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.426
OLF49309.1	OLF49650.1	BU200_08045	BU200_06155	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.410
OLF49309.1	OLF49922.1	BU200_08045	BU200_04930	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.458
OLF49309.1	OLF50322.1	BU200_08045	BU200_02875	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.401
OLF49309.1	OLF50790.1	BU200_08045	BU200_00180	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
OLF49309.1	vicR	BU200_08045	BU200_08415	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.455
OLF49604.1	OLF49922.1	BU200_06265	BU200_04930	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.617
OLF49604.1	OLF50015.1	BU200_06265	BU200_04285	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.528
OLF49604.1	OLF50790.1	BU200_06265	BU200_00180	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.549
OLF49604.1	arlR_3	BU200_06265	BU200_00575	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.576
OLF49604.1	vicR	BU200_06265	BU200_08415	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.444
OLF49650.1	OLF49309.1	BU200_06155	BU200_08045	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.410
OLF49650.1	OLF49922.1	BU200_06155	BU200_04930	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.532
OLF49650.1	vicR	BU200_06155	BU200_08415	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.470
OLF49922.1	OLF49159.1	BU200_04930	BU200_08810	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.426
OLF49922.1	OLF49309.1	BU200_04930	BU200_08045	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.458
OLF49922.1	OLF49604.1	BU200_04930	BU200_06265	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.617
OLF49922.1	OLF49650.1	BU200_04930	BU200_06155	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.532
OLF49922.1	OLF50322.1	BU200_04930	BU200_02875	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.590
OLF50015.1	OLF49604.1	BU200_04285	BU200_06265	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.528