(5 nodes) Smc5-Smc6 complex network (Kwoniella mangroviensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	L486_07663	SP-RING-type domain-containing protein. (311 aa)
	L486_05994	SMC_N domain-containing protein. (1172 aa)
	L486_02059	Uncharacterized protein. (370 aa)
	L486_01356	Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids. (388 aa)
	L486_02016	SMC_N domain-containing protein. (1187 aa)

Your Current Organism:

Kwoniella mangroviensis

NCBI taxonomy Id: 1331196
Other names: K. mangroviensis CBS 10435, Kwoniella mangroviensis CBS 10435, Kwoniella mangroviensis CBS10435

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L486_01356	L486_02016	A0A1B9J1N5	A0A1B9J3J6	Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.	SMC_N domain-containing protein.	0.999
L486_01356	L486_02059	A0A1B9J1N5	A0A1B9IVD3	Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.	Uncharacterized protein.	0.999
L486_01356	L486_05994	A0A1B9J1N5	A0A1B9INI0	Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.	SMC_N domain-containing protein.	0.999
L486_01356	L486_07663	A0A1B9J1N5	A0A1B9IHT6	Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.	SP-RING-type domain-containing protein.	0.999
L486_02016	L486_01356	A0A1B9J3J6	A0A1B9J1N5	SMC_N domain-containing protein.	Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.	0.999
L486_02016	L486_02059	A0A1B9J3J6	A0A1B9IVD3	SMC_N domain-containing protein.	Uncharacterized protein.	0.999
L486_02016	L486_05994	A0A1B9J3J6	A0A1B9INI0	SMC_N domain-containing protein.	SMC_N domain-containing protein.	0.999
L486_02016	L486_07663	A0A1B9J3J6	A0A1B9IHT6	SMC_N domain-containing protein.	SP-RING-type domain-containing protein.	0.999
L486_02059	L486_01356	A0A1B9IVD3	A0A1B9J1N5	Uncharacterized protein.	Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.	0.999
L486_02059	L486_02016	A0A1B9IVD3	A0A1B9J3J6	Uncharacterized protein.	SMC_N domain-containing protein.	0.999
L486_02059	L486_05994	A0A1B9IVD3	A0A1B9INI0	Uncharacterized protein.	SMC_N domain-containing protein.	0.999
L486_02059	L486_07663	A0A1B9IVD3	A0A1B9IHT6	Uncharacterized protein.	SP-RING-type domain-containing protein.	0.999
L486_05994	L486_01356	A0A1B9INI0	A0A1B9J1N5	SMC_N domain-containing protein.	Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.	0.999
L486_05994	L486_02016	A0A1B9INI0	A0A1B9J3J6	SMC_N domain-containing protein.	SMC_N domain-containing protein.	0.999
L486_05994	L486_02059	A0A1B9INI0	A0A1B9IVD3	SMC_N domain-containing protein.	Uncharacterized protein.	0.999
L486_05994	L486_07663	A0A1B9INI0	A0A1B9IHT6	SMC_N domain-containing protein.	SP-RING-type domain-containing protein.	0.999
L486_07663	L486_01356	A0A1B9IHT6	A0A1B9J1N5	SP-RING-type domain-containing protein.	Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.	0.999
L486_07663	L486_02016	A0A1B9IHT6	A0A1B9J3J6	SP-RING-type domain-containing protein.	SMC_N domain-containing protein.	0.999
L486_07663	L486_02059	A0A1B9IHT6	A0A1B9IVD3	SP-RING-type domain-containing protein.	Uncharacterized protein.	0.999
L486_07663	L486_05994	A0A1B9IHT6	A0A1B9INI0	SP-RING-type domain-containing protein.	SMC_N domain-containing protein.	0.999