16 items (Kwoniella mangroviensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	L486_03602	Uncharacterized protein. (635 aa)
	L486_00628	zf-4CXXC_R1 domain-containing protein. (918 aa)
	L486_01742	RING-type domain-containing protein. (459 aa)
	L486_01281	Uncharacterized protein. (689 aa)
	L486_02310	HORMA domain-containing protein. (926 aa)
	L486_02384	TBPIP domain-containing protein. (283 aa)
	L486_02551	Checkpoint protein; Belongs to the HUS1 family. (307 aa)
	L486_01390	Uncharacterized protein. (676 aa)
	L486_07706	Meiotic recombinase Dmc1; Belongs to the RecA family. (350 aa)
	L486_07803	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily. (344 aa)
	L486_05602	Ubiquitin-like domain-containing protein. (101 aa)
	L486_05677	DNA repair protein RAD50. (1360 aa)
	L486_00753	Uncharacterized protein. (985 aa)
	L486_07664	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (613 aa)
	L486_07570	Structural maintenance of chromosomes protein. (1306 aa)
	L486_06710	Uncharacterized protein. (341 aa)

Your Current Organism:

Kwoniella mangroviensis

NCBI taxonomy Id: 1331196
Other names: K. mangroviensis CBS 10435, Kwoniella mangroviensis CBS 10435, Kwoniella mangroviensis CBS10435

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L486_00628	L486_02551	A0A1B9IZY7	A0A1B9IWH7	zf-4CXXC_R1 domain-containing protein.	Checkpoint protein; Belongs to the HUS1 family.	0.965
L486_00628	L486_05677	A0A1B9IZY7	A0A1B9IMN0	zf-4CXXC_R1 domain-containing protein.	DNA repair protein RAD50.	0.610
L486_00628	L486_06710	A0A1B9IZY7	A0A1B9IKF1	zf-4CXXC_R1 domain-containing protein.	Uncharacterized protein.	0.965
L486_00628	L486_07664	A0A1B9IZY7	A0A1B9IH48	zf-4CXXC_R1 domain-containing protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.896
L486_00628	L486_07706	A0A1B9IZY7	A0A1B9IGP5	zf-4CXXC_R1 domain-containing protein.	Meiotic recombinase Dmc1; Belongs to the RecA family.	0.495
L486_00628	L486_07803	A0A1B9IZY7	A0A1B9IGV2	zf-4CXXC_R1 domain-containing protein.	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.	0.650
L486_00753	L486_01742	A0A1B9IZZ4	A0A1B9J2Q6	Uncharacterized protein.	RING-type domain-containing protein.	0.566
L486_00753	L486_02310	A0A1B9IZZ4	A0A1B9IVT5	Uncharacterized protein.	HORMA domain-containing protein.	0.545
L486_01281	L486_02310	A0A1B9J1U4	A0A1B9IVT5	Uncharacterized protein.	HORMA domain-containing protein.	0.625
L486_01281	L486_03602	A0A1B9J1U4	A0A1B9IU90	Uncharacterized protein.	Uncharacterized protein.	0.687
L486_01281	L486_05602	A0A1B9J1U4	A0A1B9IMB2	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.675
L486_01281	L486_07570	A0A1B9J1U4	A0A1B9IHQ2	Uncharacterized protein.	Structural maintenance of chromosomes protein.	0.988
L486_01281	L486_07706	A0A1B9J1U4	A0A1B9IGP5	Uncharacterized protein.	Meiotic recombinase Dmc1; Belongs to the RecA family.	0.598
L486_01390	L486_02551	A0A1B9J1S0	A0A1B9IWH7	Uncharacterized protein.	Checkpoint protein; Belongs to the HUS1 family.	0.991
L486_01390	L486_05677	A0A1B9J1S0	A0A1B9IMN0	Uncharacterized protein.	DNA repair protein RAD50.	0.638
L486_01390	L486_06710	A0A1B9J1S0	A0A1B9IKF1	Uncharacterized protein.	Uncharacterized protein.	0.999
L486_01390	L486_07664	A0A1B9J1S0	A0A1B9IH48	Uncharacterized protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.947
L486_01390	L486_07706	A0A1B9J1S0	A0A1B9IGP5	Uncharacterized protein.	Meiotic recombinase Dmc1; Belongs to the RecA family.	0.625
L486_01390	L486_07803	A0A1B9J1S0	A0A1B9IGV2	Uncharacterized protein.	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.	0.849
L486_01742	L486_00753	A0A1B9J2Q6	A0A1B9IZZ4	RING-type domain-containing protein.	Uncharacterized protein.	0.566