STRINGSTRING
L486_01072 L486_01072 L486_00835 L486_00835 L486_06513 L486_06513 L486_07168 L486_07168 L486_08003 L486_08003 L486_08445 L486_08445 L486_01744 L486_01744
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
L486_01072Splicing factor 3B subunit 1. (1140 aa)
L486_00835Splicing factor 3B subunit 2. (610 aa)
L486_06513Ubiquitin-like domain-containing protein. (250 aa)
L486_07168Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (128 aa)
L486_08003PHD finger-like domain-containing protein 5B. (107 aa)
L486_08445Small nuclear ribonucleoprotein G. (62 aa)
L486_01744Pre-mRNA branch site protein p14. (120 aa)
Your Current Organism:
Kwoniella mangroviensis
NCBI taxonomy Id: 1331196
Other names: K. mangroviensis CBS 10435, Kwoniella mangroviensis CBS 10435, Kwoniella mangroviensis CBS10435
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