STRINGSTRING
L486_06614 L486_06614 L486_07307 L486_07307 L486_08445 L486_08445 L486_08335 L486_08335 L486_08043 L486_08043 L486_07158 L486_07158 L486_06668 L486_06668 L486_06085 L486_06085 L486_06341 L486_06341 L486_05837 L486_05837 CLP1 CLP1 L486_05119 L486_05119 L486_04042 L486_04042 L486_04076 L486_04076 L486_02262 L486_02262 L486_02922 L486_02922 L486_00265 L486_00265 L486_00413 L486_00413 L486_01320 L486_01320 L486_07648 L486_07648 L486_07573 L486_07573 L486_07280 L486_07280
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
L486_06614Polyadenylate-binding protein 2. (197 aa)
L486_07307mRNA 3'-end-processing protein YTH1. (351 aa)
L486_08445Small nuclear ribonucleoprotein G. (62 aa)
L486_08335Suf domain-containing protein. (1097 aa)
L486_08043Uncharacterized protein. (174 aa)
L486_07158RRM domain-containing protein. (342 aa)
L486_06668Small nuclear ribonucleoprotein Sm D3. (124 aa)
L486_06085Symplekin. (1119 aa)
L486_06341Protein CFT1. (1377 aa)
L486_05837Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
CLP1mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation. (501 aa)
L486_05119Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (213 aa)
L486_04042Polyadenylation factor subunit 2. (748 aa)
L486_04076Endoribonuclease YSH1. (760 aa)
L486_02262Uncharacterized protein. (667 aa)
L486_02922Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (679 aa)
L486_00265CID domain-containing protein. (735 aa)
L486_00413Nuclear cap-binding protein subunit 2. (225 aa)
L486_01320Fip1 domain-containing protein. (714 aa)
L486_07648Cleavage and polyadenylation specificity factor subunit 2. (959 aa)
L486_07573Small nuclear ribonucleoprotein F. (84 aa)
L486_07280Nuclear cap-binding protein subunit 1. (934 aa)
Your Current Organism:
Kwoniella mangroviensis
NCBI taxonomy Id: 1331196
Other names: K. mangroviensis CBS 10435, Kwoniella mangroviensis CBS 10435, Kwoniella mangroviensis CBS10435
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