14 items (Kwoniella mangroviensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
	L486_05837	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	L486_04118	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	L486_05943	U6 snRNA-associated Sm-like protein LSm6. (89 aa)
	L486_07168	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (128 aa)
	L486_08311	Small nuclear ribonucleoprotein Sm D2. (111 aa)
	L486_08445	Small nuclear ribonucleoprotein G. (62 aa)
	L486_07573	Small nuclear ribonucleoprotein F. (84 aa)
	L486_06668	Small nuclear ribonucleoprotein Sm D3. (124 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (157 aa)
	L486_02453	U6 snRNA-associated Sm-like protein LSm7. (106 aa)
	L486_03059	Small nuclear ribonucleoprotein B and B. (209 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (84 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (135 aa)

Your Current Organism:

Kwoniella mangroviensis

NCBI taxonomy Id: 1331196
Other names: K. mangroviensis CBS 10435, Kwoniella mangroviensis CBS 10435, Kwoniella mangroviensis CBS10435

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L486_02453	L486_03059	A0A1B9IW65	A0A1B9ISQ3	U6 snRNA-associated Sm-like protein LSm7.	Small nuclear ribonucleoprotein B and B.	0.937
L486_02453	L486_04118	A0A1B9IW65	A0A1B9IRB3	U6 snRNA-associated Sm-like protein LSm7.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
L486_02453	L486_05837	A0A1B9IW65	A0A1B9ING1	U6 snRNA-associated Sm-like protein LSm7.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.983
L486_02453	L486_05943	A0A1B9IW65	A0A1B9INZ3	U6 snRNA-associated Sm-like protein LSm7.	U6 snRNA-associated Sm-like protein LSm6.	0.999
L486_02453	L486_06668	A0A1B9IW65	A0A1B9IK39	U6 snRNA-associated Sm-like protein LSm7.	Small nuclear ribonucleoprotein Sm D3.	0.997
L486_02453	L486_07168	A0A1B9IW65	A0A1B9IH89	U6 snRNA-associated Sm-like protein LSm7.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.982
L486_02453	L486_07573	A0A1B9IW65	A0A1B9IHJ5	U6 snRNA-associated Sm-like protein LSm7.	Small nuclear ribonucleoprotein F.	0.988
L486_02453	L486_08311	A0A1B9IW65	A0A1B9IF76	U6 snRNA-associated Sm-like protein LSm7.	Small nuclear ribonucleoprotein Sm D2.	0.993
L486_02453	L486_08445	A0A1B9IW65	A0A1B9IET6	U6 snRNA-associated Sm-like protein LSm7.	Small nuclear ribonucleoprotein G.	0.976
L486_02453	LSM1	A0A1B9IW65	A0A1B9J2T4	U6 snRNA-associated Sm-like protein LSm7.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.999
L486_02453	LSM3	A0A1B9IW65	A0A1B9ISK0	U6 snRNA-associated Sm-like protein LSm7.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
L486_02453	LSM4	A0A1B9IW65	A0A1B9IM84	U6 snRNA-associated Sm-like protein LSm7.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
L486_02453	LSM5	A0A1B9IW65	A0A1B9IXX4	U6 snRNA-associated Sm-like protein LSm7.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.999
L486_03059	L486_02453	A0A1B9ISQ3	A0A1B9IW65	Small nuclear ribonucleoprotein B and B.	U6 snRNA-associated Sm-like protein LSm7.	0.937
L486_03059	L486_04118	A0A1B9ISQ3	A0A1B9IRB3	Small nuclear ribonucleoprotein B and B.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.955
L486_03059	L486_05837	A0A1B9ISQ3	A0A1B9ING1	Small nuclear ribonucleoprotein B and B.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.998
L486_03059	L486_05943	A0A1B9ISQ3	A0A1B9INZ3	Small nuclear ribonucleoprotein B and B.	U6 snRNA-associated Sm-like protein LSm6.	0.942
L486_03059	L486_06668	A0A1B9ISQ3	A0A1B9IK39	Small nuclear ribonucleoprotein B and B.	Small nuclear ribonucleoprotein Sm D3.	0.998
L486_03059	L486_07168	A0A1B9ISQ3	A0A1B9IH89	Small nuclear ribonucleoprotein B and B.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.998
L486_03059	L486_07573	A0A1B9ISQ3	A0A1B9IHJ5	Small nuclear ribonucleoprotein B and B.	Small nuclear ribonucleoprotein F.	0.998