(11 nodes) Mixed, incl. Histidine catabolic process, and Na+/H+ antiporter 1 network (Sphingobium baderi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALR22262.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)
	nhaA	Sodium:proton antiporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family. (398 aa)
	hutU	Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. (554 aa)
	ALR19869.1	N-formylglutamate deformylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)
	hutH	Catalyzes the degradation of histidine to urocanate and ammmonia; Derived by automated computational analysis using gene prediction method: Protein Homology. (508 aa)
	hutI	Imidazolonepropionase; Derived by automated computational analysis using gene prediction method: Protein Homology. (390 aa)
	ALR19872.1	N-formimino-L-glutamate deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (451 aa)
	ALR19873.1	Histidine utilization repressor; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa)
	ALR22218.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (75 aa)
	ALR22795.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (71 aa)
	ALR22219.1	N-formylglutamate amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (297 aa)

Your Current Organism:

Sphingobium baderi

NCBI taxonomy Id: 1332080
Other names: CCM 7981, DSM 25433, S. baderi, Sphingobium baderi Kaur et al. 2013, strain LL03

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALR19869.1	ALR19872.1	ATN00_05640	ATN00_05655	N-formylglutamate deformylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-formimino-L-glutamate deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
ALR19869.1	ALR19873.1	ATN00_05640	ATN00_05660	N-formylglutamate deformylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine utilization repressor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
ALR19869.1	hutH	ATN00_05640	ATN00_05645	N-formylglutamate deformylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Catalyzes the degradation of histidine to urocanate and ammmonia; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
ALR19869.1	hutI	ATN00_05640	ATN00_05650	N-formylglutamate deformylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Imidazolonepropionase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
ALR19869.1	hutU	ATN00_05640	ATN00_05635	N-formylglutamate deformylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.	0.951
ALR19869.1	nhaA	ATN00_05640	ATN00_05630	N-formylglutamate deformylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sodium:proton antiporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.	0.437
ALR19872.1	ALR19869.1	ATN00_05655	ATN00_05640	N-formimino-L-glutamate deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-formylglutamate deformylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
ALR19872.1	ALR19873.1	ATN00_05655	ATN00_05660	N-formimino-L-glutamate deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine utilization repressor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.968
ALR19872.1	ALR22219.1	ATN00_05655	ATN00_19790	N-formimino-L-glutamate deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-formylglutamate amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.693
ALR19872.1	hutH	ATN00_05655	ATN00_05645	N-formimino-L-glutamate deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Catalyzes the degradation of histidine to urocanate and ammmonia; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.931
ALR19872.1	hutI	ATN00_05655	ATN00_05650	N-formimino-L-glutamate deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Imidazolonepropionase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
ALR19872.1	hutU	ATN00_05655	ATN00_05635	N-formimino-L-glutamate deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.	0.924
ALR19873.1	ALR19869.1	ATN00_05660	ATN00_05640	Histidine utilization repressor; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-formylglutamate deformylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
ALR19873.1	ALR19872.1	ATN00_05660	ATN00_05655	Histidine utilization repressor; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-formimino-L-glutamate deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.968
ALR19873.1	hutH	ATN00_05660	ATN00_05645	Histidine utilization repressor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Catalyzes the degradation of histidine to urocanate and ammmonia; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.930
ALR19873.1	hutI	ATN00_05660	ATN00_05650	Histidine utilization repressor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Imidazolonepropionase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.944
ALR19873.1	hutU	ATN00_05660	ATN00_05635	Histidine utilization repressor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.	0.908
ALR22218.1	ALR22219.1	ATN00_19780	ATN00_19790	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-formylglutamate amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
ALR22218.1	ALR22795.1	ATN00_19780	ATN00_19785	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.782
ALR22219.1	ALR19872.1	ATN00_19790	ATN00_05655	N-formylglutamate amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-formimino-L-glutamate deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.693