(12 nodes) Mixed, incl. Atrazine degradation, and Domain of unknown function DUF1989 network (Sphingobium baderi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALR19307.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
	ALR19308.1	Catalyzes the hydrolysis of allophanate; Derived by automated computational analysis using gene prediction method: Protein Homology. (589 aa)
	ALR19309.1	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1198 aa)
	ALR19310.1	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa)
	ALR19311.1	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)
	ALR19312.1	CopG family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (150 aa)
	ALR19313.1	Lauroyl acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
	ALR19314.1	Lipid kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa)
	ALR19315.1	Lipid kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (360 aa)
	ALR22797.1	UrcA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (112 aa)
	ALR22234.1	Sterol desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology. (329 aa)
	ALR22235.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (203 aa)

Your Current Organism:

Sphingobium baderi

NCBI taxonomy Id: 1332080
Other names: CCM 7981, DSM 25433, S. baderi, Sphingobium baderi Kaur et al. 2013, strain LL03

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALR19307.1	ALR19308.1	ATN00_02305	ATN00_02310	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Catalyzes the hydrolysis of allophanate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.807
ALR19307.1	ALR19309.1	ATN00_02305	ATN00_02315	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.858
ALR19307.1	ALR19310.1	ATN00_02305	ATN00_02320	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.787
ALR19307.1	ALR19311.1	ATN00_02305	ATN00_02325	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.806
ALR19307.1	ALR19312.1	ATN00_02305	ATN00_02330	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	CopG family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.869
ALR19307.1	ALR19313.1	ATN00_02305	ATN00_02335	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lauroyl acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.761
ALR19307.1	ALR19314.1	ATN00_02305	ATN00_02340	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipid kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778
ALR19307.1	ALR19315.1	ATN00_02305	ATN00_02345	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipid kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.683
ALR19307.1	ALR22234.1	ATN00_02305	ATN00_19880	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sterol desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
ALR19308.1	ALR19307.1	ATN00_02310	ATN00_02305	Catalyzes the hydrolysis of allophanate; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.807
ALR19308.1	ALR19309.1	ATN00_02310	ATN00_02315	Catalyzes the hydrolysis of allophanate; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ALR19308.1	ALR19310.1	ATN00_02310	ATN00_02320	Catalyzes the hydrolysis of allophanate; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.971
ALR19308.1	ALR19311.1	ATN00_02310	ATN00_02325	Catalyzes the hydrolysis of allophanate; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
ALR19308.1	ALR19312.1	ATN00_02310	ATN00_02330	Catalyzes the hydrolysis of allophanate; Derived by automated computational analysis using gene prediction method: Protein Homology.	CopG family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.893
ALR19308.1	ALR19313.1	ATN00_02310	ATN00_02335	Catalyzes the hydrolysis of allophanate; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lauroyl acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.959
ALR19308.1	ALR19314.1	ATN00_02310	ATN00_02340	Catalyzes the hydrolysis of allophanate; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipid kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.958
ALR19308.1	ALR19315.1	ATN00_02310	ATN00_02345	Catalyzes the hydrolysis of allophanate; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipid kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.939
ALR19309.1	ALR19307.1	ATN00_02315	ATN00_02305	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.858
ALR19309.1	ALR19308.1	ATN00_02315	ATN00_02310	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Catalyzes the hydrolysis of allophanate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ALR19309.1	ALR19310.1	ATN00_02315	ATN00_02320	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982