(6 nodes) Alpha-helical ferredoxin network (Tessaracoccus aquimaris)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AQP49014.1	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (945 aa)
	AQP48569.1	Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)
	AQP48031.1	Glutamate synthase; Unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology. (557 aa)
	AQP49217.1	(4Fe-4S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (493 aa)
	AQP46602.1	Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)
	BW730_17200	Hydrolase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (891 aa)

Your Current Organism:

Tessaracoccus aquimaris

NCBI taxonomy Id: 1332264
Other names: JCM 19289, KACC 17540, T. aquimaris, Tessaracoccus aquimaris Tak et al. 2018, Tessaracoccus sp. NSG39, strain NSG39

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQP46602.1	AQP48569.1	BW730_02685	BW730_14730	Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
AQP48031.1	AQP49217.1	BW730_11585	BW730_05055	Glutamate synthase; Unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.	(4Fe-4S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409
AQP48031.1	BW730_17200	BW730_11585	BW730_17200	Glutamate synthase; Unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.620
AQP48569.1	AQP46602.1	BW730_14730	BW730_02685	Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
AQP49014.1	AQP49217.1	BW730_17440	BW730_05055	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	(4Fe-4S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
AQP49217.1	AQP48031.1	BW730_05055	BW730_11585	(4Fe-4S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase; Unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409
AQP49217.1	AQP49014.1	BW730_05055	BW730_17440	(4Fe-4S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
AQP49217.1	BW730_17200	BW730_05055	BW730_17200	(4Fe-4S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.845
BW730_17200	AQP48031.1	BW730_17200	BW730_11585	Hydrolase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase; Unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.620
BW730_17200	AQP49217.1	BW730_17200	BW730_05055	Hydrolase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	(4Fe-4S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.845