Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AGN00594.1 | AGN00700.1 | L593_03215 | L593_03745 | GTP-binding protein; COG1084 Predicted GTPase. | COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain. | 0.716 |
| AGN00594.1 | AGN00810.1 | L593_03215 | L593_04295 | GTP-binding protein; COG1084 Predicted GTPase. | Hypothetical protein; Probable pre-rRNA processing protein involved in ribosome biogenesis; Belongs to the TSR3 family. | 0.650 |
| AGN00594.1 | AGN01301.1 | L593_03215 | L593_06770 | GTP-binding protein; COG1084 Predicted GTPase. | COG1094 Predicted RNA-binding protein (contains KH domains). | 0.709 |
| AGN00594.1 | AGN01914.1 | L593_03215 | L593_09845 | GTP-binding protein; COG1084 Predicted GTPase. | NMD3 family protein; COG1499 NMD protein affecting ribosome stability and mRNA decay. | 0.953 |
| AGN00594.1 | AGN02579.1 | L593_03215 | L593_13200 | GTP-binding protein; COG1084 Predicted GTPase. | Hypothetical protein; COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module. | 0.656 |
| AGN00594.1 | AGN02853.1 | L593_03215 | L593_14585 | GTP-binding protein; COG1084 Predicted GTPase. | H/ACA RNA-protein complex component Gar1; COG3277 RNA-binding protein involved in rRNA processing. | 0.618 |
| AGN00594.1 | eif6 | L593_03215 | L593_05565 | GTP-binding protein; COG1084 Predicted GTPase. | Translation initiation factor IF-6; Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex. | 0.902 |
| AGN00594.1 | flpA | L593_03215 | L593_10735 | GTP-binding protein; COG1084 Predicted GTPase. | Fibrillarin; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family. | 0.915 |
| AGN00594.1 | ksgA | L593_03215 | L593_01395 | GTP-binding protein; COG1084 Predicted GTPase. | 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. RsmA subfamily. | 0.735 |
| AGN00700.1 | AGN00594.1 | L593_03745 | L593_03215 | COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain. | GTP-binding protein; COG1084 Predicted GTPase. | 0.716 |
| AGN00700.1 | AGN00810.1 | L593_03745 | L593_04295 | COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain. | Hypothetical protein; Probable pre-rRNA processing protein involved in ribosome biogenesis; Belongs to the TSR3 family. | 0.592 |
| AGN00700.1 | AGN01301.1 | L593_03745 | L593_06770 | COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain. | COG1094 Predicted RNA-binding protein (contains KH domains). | 0.943 |
| AGN00700.1 | AGN01914.1 | L593_03745 | L593_09845 | COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain. | NMD3 family protein; COG1499 NMD protein affecting ribosome stability and mRNA decay. | 0.760 |
| AGN00700.1 | AGN02579.1 | L593_03745 | L593_13200 | COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain. | Hypothetical protein; COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module. | 0.950 |
| AGN00700.1 | eif6 | L593_03745 | L593_05565 | COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain. | Translation initiation factor IF-6; Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex. | 0.496 |
| AGN00700.1 | flpA | L593_03745 | L593_10735 | COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain. | Fibrillarin; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family. | 0.490 |
| AGN00700.1 | ksgA | L593_03745 | L593_01395 | COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain. | 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. RsmA subfamily. | 0.847 |
| AGN00810.1 | AGN00594.1 | L593_04295 | L593_03215 | Hypothetical protein; Probable pre-rRNA processing protein involved in ribosome biogenesis; Belongs to the TSR3 family. | GTP-binding protein; COG1084 Predicted GTPase. | 0.650 |
| AGN00810.1 | AGN00700.1 | L593_04295 | L593_03745 | Hypothetical protein; Probable pre-rRNA processing protein involved in ribosome biogenesis; Belongs to the TSR3 family. | COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain. | 0.592 |
| AGN00810.1 | AGN01301.1 | L593_04295 | L593_06770 | Hypothetical protein; Probable pre-rRNA processing protein involved in ribosome biogenesis; Belongs to the TSR3 family. | COG1094 Predicted RNA-binding protein (contains KH domains). | 0.419 |
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