STRINGSTRING
BD94_2778 BD94_2778 BD94_0030 BD94_0030 BD94_0053 BD94_0053 rpmA rpmA BD94_0187 BD94_0187 BD94_0220 BD94_0220 BD94_0422 BD94_0422 BD94_0436 BD94_0436 BD94_0514 BD94_0514 BD94_0591 BD94_0591 BD94_0706 BD94_0706 BD94_0781 BD94_0781 BD94_0869 BD94_0869 BD94_0870 BD94_0870 BD94_0991 BD94_0991 BD94_1082 BD94_1082 dnaG dnaG BD94_1231 BD94_1231 BD94_1250 BD94_1250 BD94_1346 BD94_1346 BD94_1491 BD94_1491 BD94_1608 BD94_1608 BD94_1616 BD94_1616 BD94_1617 BD94_1617 BD94_1619 BD94_1619 BD94_1620 BD94_1620 BD94_1954 BD94_1954 BD94_2017 BD94_2017 BD94_2192 BD94_2192 prfC prfC BD94_2266 BD94_2266 BD94_2319 BD94_2319 BD94_2323 BD94_2323 BD94_2407 BD94_2407 BD94_2493 BD94_2493 BD94_2587 BD94_2587 BD94_2779 BD94_2779 BD94_2951 BD94_2951 BD94_3186 BD94_3186 BD94_3217 BD94_3217 BD94_3358 BD94_3358 BD94_3360 BD94_3360 rpoB rpoB rpoC rpoC rpoA rpoA BD94_3701 BD94_3701 BD94_3742 BD94_3742 BD94_3853 BD94_3853 BD94_3919 BD94_3919 BD94_3920 BD94_3920 BD94_4034 BD94_4034 BD94_4057 BD94_4057
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BD94_2778Hypothetical protein. (272 aa)
BD94_0030RNA polymerase ECF-type sigma factor. (106 aa)
BD94_0053RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (177 aa)
rpmALSU ribosomal protein L27p; Belongs to the bacterial ribosomal protein bL27 family. (85 aa)
BD94_0187RNA polymerase sigma-70 factor, ECF subfamily. (196 aa)
BD94_0220RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (169 aa)
BD94_0422RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (179 aa)
BD94_0436RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (164 aa)
BD94_0514Hypothetical protein. (120 aa)
BD94_0591DNA repair protein RadC. (903 aa)
BD94_0706DUF1801 domain-containing protein. (150 aa)
BD94_0781RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (185 aa)
BD94_0869Hypothetical protein. (68 aa)
BD94_0870Sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (184 aa)
BD94_0991RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (166 aa)
BD94_1082Cell division protein FtsK. (824 aa)
dnaGDNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family. (639 aa)
BD94_1231NAD synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source. (263 aa)
BD94_1250RNA polymerase sigma-70 factor; Belongs to the sigma-70 factor family. ECF subfamily. (186 aa)
BD94_1346Hypothetical protein. (275 aa)
BD94_1491DNA primase. (139 aa)
BD94_1608DNA primase. (279 aa)
BD94_1616Type I restriction-modification system, specificity subunit S. (399 aa)
BD94_1617Type I restriction-modification system, specificity subunit S. (174 aa)
BD94_1619Type I restriction-modification system, specificity subunit S. (144 aa)
BD94_1620Type I restriction-modification system, specificity subunit S. (400 aa)
BD94_1954Putative polyketide cyclase. (324 aa)
BD94_2017DNA repair protein RadC; Belongs to the UPF0758 family. (225 aa)
BD94_2192RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (138 aa)
prfCPeptide chain release factor; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. (532 aa)
BD94_2266RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (288 aa)
BD94_2319DNA primase. (317 aa)
BD94_2323RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (266 aa)
BD94_2407Diacylglycerol kinase. (121 aa)
BD94_2493Hypothetical protein. (142 aa)
BD94_2587Deoxyguanosinetriphosphate triphosphohydrolase. (452 aa)
BD94_2779RNA polymerase sigma-70 factor; Belongs to the sigma-70 factor family. ECF subfamily. (158 aa)
BD94_2951Hypothetical protein. (470 aa)
BD94_3186DNA repair protein RadC. (156 aa)
BD94_3217DNA polymerase III alpha subunit. (1017 aa)
BD94_3358RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (164 aa)
BD94_3360RNA polymerase sigma-54 factor RpoN. (487 aa)
rpoBDNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1274 aa)
rpoCDNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1420 aa)
rpoADNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (331 aa)
BD94_3701Hypothetical protein. (790 aa)
BD94_3742DNA primase. (279 aa)
BD94_3853RNA polymerase sigma-54 factor RpoN; Belongs to the sigma-70 factor family. ECF subfamily. (183 aa)
BD94_3919Hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (107 aa)
BD94_3920Lipoprotein, putative. (338 aa)
BD94_4034Deoxyguanosinetriphosphate triphosphohydrolase. (550 aa)
BD94_4057RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (185 aa)
Your Current Organism:
Elizabethkingia anophelis
NCBI taxonomy Id: 1338011
Other names: E. anophelis NUHP1, Elizabethkingia anophelis NUHP1
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