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| | rplR | LSU ribosomal protein L18p (L5e); This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (118 aa) |
| | rplU | LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (132 aa) |
| | BD94_0205 | DnaK suppressor protein, putative. (126 aa) |
| | rpmE2 | LSU ribosomal protein L31p. (84 aa) |
| | BD94_0231 | Hypothetical protein. (362 aa) |
| | rplM | LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (151 aa) |
| | rpsI | SSU ribosomal protein S9p (S16e); Belongs to the universal ribosomal protein uS9 family. (128 aa) |
| | rpsB | SSU ribosomal protein S2p (SAe); Belongs to the universal ribosomal protein uS2 family. (252 aa) |
| | BD94_0261 | Capsular polysaccharide biosynthesis protein. (404 aa) |
| | rpmF | LSU ribosomal protein L32p; Belongs to the bacterial ribosomal protein bL32 family. (67 aa) |
| | rpmH | LSU ribosomal protein L34p; Belongs to the bacterial ribosomal protein bL34 family. (51 aa) |
| | BD94_0278 | 3'-to-5' oligoribonuclease A. (334 aa) |
| | BD94_0299 | Two-component sensor histidine kinase. (453 aa) |
| | rpsU | SSU ribosomal protein S21p; Belongs to the bacterial ribosomal protein bS21 family. (65 aa) |
| | BD94_0358 | Ribosome hibernation protein YhbH. (96 aa) |
| | rplJ | LSU ribosomal protein L10p (P0); Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (196 aa) |
| | rplL | LSU ribosomal protein L7/L12 (P1/P2); Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (122 aa) |
| | BD94_0394 | Carbonic anhydrase, family 3. (172 aa) |
| | BD94_0395 | DNA repair and recombination protein, putative helicase. (715 aa) |
| | rpmB | LSU ribosomal protein L28p; Belongs to the bacterial ribosomal protein bL28 family. (78 aa) |
| | BD94_0402 | LSU ribosomal protein L33p / LSU ribosomal protein L33p, zinc-independent. (39 aa) |
| | BD94_0411 | ATP-dependent DNA helicase RecQ. (633 aa) |
| | BD94_0448 | DNA-binding protein HU-beta; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. (95 aa) |
| | BD94_0475 | Conjugative transposon protein TraJ. (308 aa) |
| | BD94_0507 | DNA topoisomerase III. (697 aa) |
| | BD94_0517 | Nitroreductase. (170 aa) |
| | BD94_0589 | Hypothetical protein. (1917 aa) |
| | BD94_0591 | DNA repair protein RadC. (903 aa) |
| | BD94_0599 | Conjugative transposon protein TraJ. (390 aa) |
| | BD94_0623 | Hypothetical protein. (239 aa) |
| | BD94_0624 | Replicative DNA helicase. (379 aa) |
| | BD94_0648 | DNA topoisomerase III. (680 aa) |
| | BD94_0755 | DNA recombination and repair protein RecO. (224 aa) |
| | BD94_0913 | Hypothetical protein. (110 aa) |
| | BD94_0951 | Hypothetical protein. (110 aa) |
| | BD94_1051 | DNA topoisomerase III. (702 aa) |
| | recR | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (201 aa) |
| | BD94_1155 | Carboxylesterase, type B; Belongs to the type-B carboxylesterase/lipase family. (444 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family. (639 aa) |
| | cutC | Cytoplasmic copper homeostasis protein cutC; Participates in the control of copper homeostasis. Belongs to the CutC family. (220 aa) |
| | BD94_1282 | DNA-binding protein HU; Belongs to the bacterial histone-like protein family. (98 aa) |
| | BD94_1374 | Putative phosphoesterase. (402 aa) |
| | BD94_1428 | ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family. (424 aa) |
| | BD94_1434 | Cold-shock DEAD-box protein A; Belongs to the DEAD box helicase family. (560 aa) |
| | BD94_1439 | Chromosome (plasmid) partitioning protein ParB / Stage 0 sporulation protein J; Belongs to the ParB family. (289 aa) |
| | BD94_1485 | Hypothetical protein. (180 aa) |
| | BD94_1487 | Hypothetical protein. (234 aa) |
| | BD94_1491 | DNA primase. (139 aa) |
| | BD94_1555 | Conjugative transposon protein TraJ. (411 aa) |
| | BD94_1567 | Hypothetical protein. (1722 aa) |
| | BD94_1603 | Hypothetical protein. (180 aa) |
| | BD94_1605 | Hypothetical protein. (234 aa) |
| | BD94_1608 | DNA primase. (279 aa) |
| | BD94_1666 | Conjugative transposon protein TraJ. (393 aa) |
| | BD94_1680 | Hypothetical protein. (1722 aa) |
| | BD94_1847 | DNA helicase, SNF2/RAD54 family domain protein. (1111 aa) |
| | BD94_1995 | Putative ATP-dependent RNA helicase. (448 aa) |
| | BD94_2017 | DNA repair protein RadC; Belongs to the UPF0758 family. (225 aa) |
| | BD94_2064 | ATPase, AAA family. (426 aa) |
| | BD94_2148 | Molybdopterin biosynthesis protein MoeA; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family. (401 aa) |
| | BD94_2209 | Hypothetical protein. (255 aa) |
| | BD94_2240 | Uridine kinase. (206 aa) |
| | BD94_2318 | Hypothetical protein. (409 aa) |
| | BD94_2319 | DNA primase. (317 aa) |
| | BD94_2351 | DNA-binding protein, histone-like family. (128 aa) |
| | BD94_2364 | Cell division protein FtsH. (240 aa) |
| | BD94_2378 | Hypothetical protein. (164 aa) |
| | BD94_2398 | Hypothetical protein. (455 aa) |
| | BD94_2407 | Diacylglycerol kinase. (121 aa) |
| | BD94_2410 | OmpA domain protein. (276 aa) |
| | priA | Helicase PriA essential for oriC/DnaA-independent DNA replication; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (812 aa) |
| | BD94_2442 | Long-chain-fatty-acid--CoA ligase. (589 aa) |
| | cobB | NAD-dependent protein deacetylase of SIR2 family; Belongs to the sirtuin family. Class III subfamily. (226 aa) |
| | BD94_2461 | Two component system histidine kinase. (434 aa) |
| | rpsF | SSU ribosomal protein S6p; Binds together with S18 to 16S ribosomal RNA. (135 aa) |
| | rpsR | SSU ribosomal protein S18p / SSU ribosomal protein S18p, zinc-independent; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (100 aa) |
| | BD94_2518 | Sensory transduction histidine kinase. (469 aa) |
| | BD94_2557 | ATP-dependent RNA helicase. (435 aa) |
| | rpmI | LSU ribosomal protein L35p; Belongs to the bacterial ribosomal protein bL35 family. (65 aa) |
| | BD94_2596 | ATP-dependent DNA helicase RecQ. (735 aa) |
| | recF | DNA recombination and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. (359 aa) |
| | BD94_2719 | Hypothetical protein. (160 aa) |
| | BD94_2782 | Hypothetical protein. (236 aa) |
| | BD94_2783 | Hypothetical protein. (270 aa) |
| | BD94_2818 | Sensor histidine kinase. (458 aa) |
| | BD94_2857 | Deoxyguanosinetriphosphate triphosphohydrolase. (413 aa) |
| | rpsO | SSU ribosomal protein S15p (S13e); Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (89 aa) |
| | BD94_2888 | ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family. (375 aa) |
| | BD94_2904 | Phytoene dehydrogenase. (498 aa) |
| | BD94_3088 | Long-chain-fatty-acid--CoA ligase. (587 aa) |
| | BD94_3119 | Hypothetical protein. (559 aa) |
| | BD94_3126 | MoxR-like ATPase in aerotolerance operon. (334 aa) |
| | BD94_3161 | DNA topoisomerase III. (693 aa) |
| | BD94_3186 | DNA repair protein RadC. (156 aa) |
| | BD94_3193 | Conjugative transposon protein TraJ. (331 aa) |
| | BD94_3269 | Cob(I)alamin adenosyltransferase PduO; Belongs to the Cob(I)alamin adenosyltransferase family. (191 aa) |
| | rpsP | SSU ribosomal protein S16p; Belongs to the bacterial ribosomal protein bS16 family. (190 aa) |
| | BD94_3395 | Beta-propeller domains of methanol dehydrogenase type. (267 aa) |
| | BD94_3408 | Ketol-acid reductoisomerase. (350 aa) |
| | dtd | D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (149 aa) |
| | BD94_3432 | Phosphoesterase. (279 aa) |
| | BD94_3437 | Methylglutaconyl-CoA hydratase. (254 aa) |
| | BD94_3442 | Phenylacetic acid degradation protein PaaY. (197 aa) |
| | BD94_3579 | Hypothetical protein. (237 aa) |
| | BD94_3610 | MoxR-like ATPase. (341 aa) |
| | BD94_3627 | Hypothetical protein. (299 aa) |
| | BD94_3634 | LSU ribosomal protein L17p; Belongs to the bacterial ribosomal protein bL17 family. (151 aa) |
| | rpsK | SSU ribosomal protein S11p (S14e); Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (129 aa) |
| | rplO | LSU ribosomal protein L15p (L27Ae); Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (149 aa) |
| | rpmD | LSU ribosomal protein L30p (L7e). (59 aa) |
| | rpsE | SSU ribosomal protein S5p (S2e); Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (173 aa) |
| | rpsH | SSU ribosomal protein S8p (S15Ae); One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (132 aa) |
| | rpsN | SSU ribosomal protein S14p (S29e); Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. (89 aa) |
| | rplE | LSU ribosomal protein L5p (L11e); This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (183 aa) |
| | rplX | LSU ribosomal protein L24p (L26e); One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. (106 aa) |
| | rplN | LSU ribosomal protein L14p (L23e); Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa) |
| | rpsQ | SSU ribosomal protein S17p (S11e); One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (84 aa) |
| | rpmC | LSU ribosomal protein L29p (L35e); Belongs to the universal ribosomal protein uL29 family. (61 aa) |
| | rpsC | SSU ribosomal protein S3p (S3e); Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (242 aa) |
| | rpsS | SSU ribosomal protein S19p (S15e); Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (92 aa) |
| | rplB | LSU ribosomal protein L2p (L8e); One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (273 aa) |
| | rplW | LSU ribosomal protein L23p (L23Ae); One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (96 aa) |
| | rplC | LSU ribosomal protein L3p (L3e); One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (208 aa) |
| | rpsJ | SSU ribosomal protein S10p (S20e); Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (101 aa) |
| | rpsG | SSU ribosomal protein S7p (S5e); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (158 aa) |
| | BD94_3699 | Hypothetical protein. (1672 aa) |
| | BD94_3701 | Hypothetical protein. (790 aa) |
| | BD94_3710 | Conjugative transposon protein TraJ. (416 aa) |
| | BD94_3742 | DNA primase. (279 aa) |
| | BD94_3745 | Hypothetical protein. (233 aa) |
| | BD94_3801 | Hypothetical protein. (115 aa) |
| | BD94_3804 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (525 aa) |
| | BD94_3814 | Putative phosphotransferase related to Ser/Thr protein kinase. (339 aa) |
| | BD94_3831 | Catalase; Belongs to the catalase family. (497 aa) |
| | BD94_3833 | dCMP deaminase. (146 aa) |
| | BD94_3917 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. (550 aa) |
| | nth | Endonuclease III 8; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (206 aa) |
| | rplY | LSU ribosomal protein L25p; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (203 aa) |
| | BD94_4006 | Hypothetical protein. (127 aa) |
| | BD94_4044 | ADP-ribosylglycohydrolase. (312 aa) |
| | BD94_4048 | ADP-ribosylglycohydrolase. (140 aa) |
