12 items (Rhizopus microsporus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2G4SH07	Histone-binding protein RBBP4-like protein. (396 aa)
	A0A2G4SJK4	Histone deacetylase. (581 aa)
	A0A2G4SN98	PAH2 domain-containing protein. (79 aa)
	A0A2G4SNB9	HDAC_interact domain-containing protein. (662 aa)
	A0A2G4SQC1	Arginase/deacetylase. (685 aa)
	A0A2G4SS38	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (479 aa)
	A0A2G4STK0	PHD-type domain-containing protein. (263 aa)
	A0A2G4SZH8	Putative retinoblastoma-binding protein. (451 aa)
	A0A2G4T0B4	HDAC_interact domain-containing protein. (1011 aa)
	A0A2G4T751	Uncharacterized protein. (292 aa)
	A0A2G4T957	PHD domain-containing protein. (195 aa)
	A0A2G4TA86	Uncharacterized protein. (508 aa)

Your Current Organism:

Rhizopus microsporus

NCBI taxonomy Id: 1340429
Other names: R. microsporus ATCC 52813, Rhizopus microsporus ATCC 52813

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2G4SH07	A0A2G4SJK4	Histone-binding protein RBBP4-like protein.	Histone deacetylase.	0.817
A0A2G4SH07	A0A2G4SN98	Histone-binding protein RBBP4-like protein.	PAH2 domain-containing protein.	0.737
A0A2G4SH07	A0A2G4SNB9	Histone-binding protein RBBP4-like protein.	HDAC_interact domain-containing protein.	0.737
A0A2G4SH07	A0A2G4SQC1	Histone-binding protein RBBP4-like protein.	Arginase/deacetylase.	0.756
A0A2G4SH07	A0A2G4SS38	Histone-binding protein RBBP4-like protein.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.817
A0A2G4SH07	A0A2G4STK0	Histone-binding protein RBBP4-like protein.	PHD-type domain-containing protein.	0.594
A0A2G4SH07	A0A2G4T0B4	Histone-binding protein RBBP4-like protein.	HDAC_interact domain-containing protein.	0.737
A0A2G4SH07	A0A2G4T751	Histone-binding protein RBBP4-like protein.	Uncharacterized protein.	0.769
A0A2G4SH07	A0A2G4T957	Histone-binding protein RBBP4-like protein.	PHD domain-containing protein.	0.594
A0A2G4SH07	A0A2G4TA86	Histone-binding protein RBBP4-like protein.	Uncharacterized protein.	0.769
A0A2G4SJK4	A0A2G4SH07	Histone deacetylase.	Histone-binding protein RBBP4-like protein.	0.817
A0A2G4SJK4	A0A2G4SN98	Histone deacetylase.	PAH2 domain-containing protein.	0.808
A0A2G4SJK4	A0A2G4SNB9	Histone deacetylase.	HDAC_interact domain-containing protein.	0.808
A0A2G4SJK4	A0A2G4SQC1	Histone deacetylase.	Arginase/deacetylase.	0.711
A0A2G4SJK4	A0A2G4STK0	Histone deacetylase.	PHD-type domain-containing protein.	0.750
A0A2G4SJK4	A0A2G4SZH8	Histone deacetylase.	Putative retinoblastoma-binding protein.	0.817
A0A2G4SJK4	A0A2G4T0B4	Histone deacetylase.	HDAC_interact domain-containing protein.	0.808
A0A2G4SJK4	A0A2G4T751	Histone deacetylase.	Uncharacterized protein.	0.840
A0A2G4SJK4	A0A2G4T957	Histone deacetylase.	PHD domain-containing protein.	0.750
A0A2G4SJK4	A0A2G4TA86	Histone deacetylase.	Uncharacterized protein.	0.851