(55 nodes) rRNA binding network (Rhizopus microsporus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2G4SFJ8	Fcf1-domain-containing protein. (167 aa)
	A0A2G4SGM6	Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family. (197 aa)
	A0A2G4SGZ1	Uncharacterized protein. (170 aa)
	A0A2G4SHK0	Ribosomal protein L37; Binds to the 23S rRNA. (93 aa)
	A0A2G4SI25	40S ribosomal protein-like protein S18; Belongs to the universal ribosomal protein uS13 family. (154 aa)
	A0A2G4SJ53	Brix-domain-containing protein. (283 aa)
	A0A2G4SJN7	Ribosomal protein L6; Belongs to the universal ribosomal protein uL6 family. (232 aa)
	A0A2G4SJS3	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (212 aa)
	A0A2G4SK30	DUF4477 domain-containing protein. (295 aa)
	A0A2G4SK89	Alpha-L RNA-binding motif-containing protein. (219 aa)
	A0A2G4SLA5	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family. (156 aa)
	A0A2G4SLB6	40S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (203 aa)
	A0A2G4SLY3	Ribosomal protein S7; Belongs to the universal ribosomal protein uS7 family. (160 aa)
	A0A2G4SM52	GTP-binding protein Era; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Era GTPase family. (383 aa)
	A0A2G4SP41	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (416 aa)
	A0A2G4SP79	Ribosomal_S17_N domain-containing protein. (153 aa)
	A0A2G4SP82	Uncharacterized protein; Belongs to the universal ribosomal protein uS15 family. (238 aa)
	A0A2G4SPR1	Ribosomal_L23eN domain-containing protein. (175 aa)
	A0A2G4SQG0	Alpha-L RNA-binding motif-containing protein. (181 aa)
	A0A2G4SQS4	Ribosomal protein S6. (111 aa)
	A0A2G4SR96	Ribosomal protein L5; Belongs to the universal ribosomal protein uL5 family. (179 aa)
	A0A2G4SRI8	Ribosomal protein L37; Binds to the 23S rRNA. (91 aa)
	A0A2G4SS56	Brix-domain-containing protein. (344 aa)
	A0A2G4STB8	Ribosomal_L18_c domain-containing protein. (294 aa)
	A0A2G4STS1	Ribosomal_L18_c domain-containing protein. (294 aa)
	A0A2G4STS7	Uncharacterized protein. (375 aa)
	A0A2G4SU33	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (310 aa)
	A0A2G4SUH2	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family. (191 aa)
	A0A2G4SUV8	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (255 aa)
	A0A2G4SVC7	Large subunit ribosomal protein L9e, variant. (187 aa)
	A0A2G4SVN3	Nep1-domain-containing protein. (213 aa)
	A0A2G4SVQ9	Brix-domain-containing protein. (303 aa)
	A0A2G4SW20	Uncharacterized protein. (281 aa)
	A0A2G4SX89	Ribosomal protein L5; Belongs to the universal ribosomal protein uL5 family. (167 aa)
	A0A2G4SXH5	Ribosomal protein L2. (254 aa)
	A0A2G4SY84	Ribosomal protein L14; Belongs to the universal ribosomal protein uL14 family. (131 aa)
	A0A2G4SY85	40S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (203 aa)
	A0A2G4SZS1	TPR-like protein. (475 aa)
	A0A2G4T0A5	Nep1-domain-containing protein. (259 aa)
	A0A2G4T0D7	Ribosomal protein L37; Binds to the 23S rRNA. (92 aa)
	A0A2G4T0L7	Brix-domain-containing protein. (285 aa)
	A0A2G4T0T7	Ribosomal protein L5; Belongs to the universal ribosomal protein uL5 family. (179 aa)
	A0A2G4T2C7	Nucleic acid-binding protein. (859 aa)
	A0A2G4T2P7	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (255 aa)
	A0A2G4T3A0	Ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family. (147 aa)
	A0A2G4T3P9	TPR-like protein. (241 aa)
	A0A2G4T3Y0	Ribosomal protein L14b/L23e; Belongs to the universal ribosomal protein uL14 family. (137 aa)
	A0A2G4T492	60S ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (165 aa)
	A0A2G4T4Y0	30S ribosomal protein S17. (86 aa)
	A0A2G4T6V6	60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family. (139 aa)
	A0A2G4T8A7	Uncharacterized protein. (232 aa)
	A0A2G4T8J1	Translational machinery component. (112 aa)
	A0A2G4T8Y9	Large subunit ribosomal protein L9e, variant. (186 aa)
	A0A2G4T911	NET domain-containing protein. (569 aa)
	A0A2G4T937	Ribosome production factor 2. (306 aa)

Your Current Organism:

Rhizopus microsporus

NCBI taxonomy Id: 1340429
Other names: R. microsporus ATCC 52813, Rhizopus microsporus ATCC 52813

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2G4SFJ8	A0A2G4SJ53	Fcf1-domain-containing protein.	Brix-domain-containing protein.	0.807
A0A2G4SFJ8	A0A2G4SJS3	Fcf1-domain-containing protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.541
A0A2G4SFJ8	A0A2G4SK89	Fcf1-domain-containing protein.	Alpha-L RNA-binding motif-containing protein.	0.762
A0A2G4SFJ8	A0A2G4SP41	Fcf1-domain-containing protein.	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.	0.687
A0A2G4SFJ8	A0A2G4SQG0	Fcf1-domain-containing protein.	Alpha-L RNA-binding motif-containing protein.	0.915
A0A2G4SFJ8	A0A2G4SS56	Fcf1-domain-containing protein.	Brix-domain-containing protein.	0.742
A0A2G4SFJ8	A0A2G4SUH2	Fcf1-domain-containing protein.	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	0.740
A0A2G4SFJ8	A0A2G4SVN3	Fcf1-domain-containing protein.	Nep1-domain-containing protein.	0.800
A0A2G4SFJ8	A0A2G4SVQ9	Fcf1-domain-containing protein.	Brix-domain-containing protein.	0.632
A0A2G4SFJ8	A0A2G4SW20	Fcf1-domain-containing protein.	Uncharacterized protein.	0.625
A0A2G4SFJ8	A0A2G4T0A5	Fcf1-domain-containing protein.	Nep1-domain-containing protein.	0.800
A0A2G4SFJ8	A0A2G4T0L7	Fcf1-domain-containing protein.	Brix-domain-containing protein.	0.824
A0A2G4SFJ8	A0A2G4T2C7	Fcf1-domain-containing protein.	Nucleic acid-binding protein.	0.749
A0A2G4SFJ8	A0A2G4T3P9	Fcf1-domain-containing protein.	TPR-like protein.	0.749
A0A2G4SFJ8	A0A2G4T8J1	Fcf1-domain-containing protein.	Translational machinery component.	0.471
A0A2G4SFJ8	A0A2G4T937	Fcf1-domain-containing protein.	Ribosome production factor 2.	0.826
A0A2G4SGM6	A0A2G4SHK0	Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	Ribosomal protein L37; Binds to the 23S rRNA.	0.571
A0A2G4SGM6	A0A2G4SI25	Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	40S ribosomal protein-like protein S18; Belongs to the universal ribosomal protein uS13 family.	0.958
A0A2G4SGM6	A0A2G4SJN7	Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	Ribosomal protein L6; Belongs to the universal ribosomal protein uL6 family.	0.997
A0A2G4SGM6	A0A2G4SJS3	Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.932