10 items (Rhizopus microsporus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2G4SN51	Uncharacterized protein. (268 aa)
	A0A2G4SP23	Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (378 aa)
	A0A2G4ST13	Uncharacterized protein. (268 aa)
	A0A2G4SZ67	Ribosomal protein S5 domain 2-like protein. (255 aa)
	A0A2G4T1K6	Uncharacterized protein. (273 aa)
	A0A2G4T313	Ribosomal protein S5 domain 2-like protein. (254 aa)
	A0A2G4SJD2	WD40 repeat-like protein. (621 aa)
	A0A2G4SM17	Ribosomal protein S5 domain 2-like protein. (226 aa)
	A0A2G4SMX3	HRDC domain-containing protein. (601 aa)
	A0A2G4SHB6	Uncharacterized protein. (275 aa)

Your Current Organism:

Rhizopus microsporus

NCBI taxonomy Id: 1340429
Other names: R. microsporus ATCC 52813, Rhizopus microsporus ATCC 52813

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2G4SHB6	A0A2G4SM17	Uncharacterized protein.	Ribosomal protein S5 domain 2-like protein.	0.999
A0A2G4SHB6	A0A2G4SMX3	Uncharacterized protein.	HRDC domain-containing protein.	0.476
A0A2G4SHB6	A0A2G4SZ67	Uncharacterized protein.	Ribosomal protein S5 domain 2-like protein.	0.999
A0A2G4SHB6	A0A2G4T1K6	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A2G4SHB6	A0A2G4T313	Uncharacterized protein.	Ribosomal protein S5 domain 2-like protein.	0.999
A0A2G4SM17	A0A2G4SHB6	Ribosomal protein S5 domain 2-like protein.	Uncharacterized protein.	0.999
A0A2G4SM17	A0A2G4SMX3	Ribosomal protein S5 domain 2-like protein.	HRDC domain-containing protein.	0.476
A0A2G4SM17	A0A2G4SZ67	Ribosomal protein S5 domain 2-like protein.	Ribosomal protein S5 domain 2-like protein.	0.999
A0A2G4SM17	A0A2G4T1K6	Ribosomal protein S5 domain 2-like protein.	Uncharacterized protein.	0.999
A0A2G4SM17	A0A2G4T313	Ribosomal protein S5 domain 2-like protein.	Ribosomal protein S5 domain 2-like protein.	0.999
A0A2G4SMX3	A0A2G4SHB6	HRDC domain-containing protein.	Uncharacterized protein.	0.476
A0A2G4SMX3	A0A2G4SM17	HRDC domain-containing protein.	Ribosomal protein S5 domain 2-like protein.	0.476
A0A2G4SMX3	A0A2G4SZ67	HRDC domain-containing protein.	Ribosomal protein S5 domain 2-like protein.	0.476
A0A2G4SMX3	A0A2G4T1K6	HRDC domain-containing protein.	Uncharacterized protein.	0.972
A0A2G4SMX3	A0A2G4T313	HRDC domain-containing protein.	Ribosomal protein S5 domain 2-like protein.	0.476
A0A2G4SZ67	A0A2G4SHB6	Ribosomal protein S5 domain 2-like protein.	Uncharacterized protein.	0.999
A0A2G4SZ67	A0A2G4SM17	Ribosomal protein S5 domain 2-like protein.	Ribosomal protein S5 domain 2-like protein.	0.999
A0A2G4SZ67	A0A2G4SMX3	Ribosomal protein S5 domain 2-like protein.	HRDC domain-containing protein.	0.476
A0A2G4SZ67	A0A2G4T1K6	Ribosomal protein S5 domain 2-like protein.	Uncharacterized protein.	0.998
A0A2G4SZ67	A0A2G4T313	Ribosomal protein S5 domain 2-like protein.	Ribosomal protein S5 domain 2-like protein.	0.999