6 items (Rhizopus microsporus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2G4T381	Uncharacterized protein. (176 aa)
	A0A2G4STG9	Polyubiquitin 5. (228 aa)
	A0A2G4SXK4	Uncharacterized protein. (156 aa)
	A0A2G4T020	Uncharacterized protein. (285 aa)
	A0A2G4T292	Uncharacterized protein. (158 aa)
	A0A2G4T9R3	Uncharacterized protein. (270 aa)

Your Current Organism:

Rhizopus microsporus

NCBI taxonomy Id: 1340429
Other names: R. microsporus ATCC 52813, Rhizopus microsporus ATCC 52813

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2G4STG9	A0A2G4SXK4	Polyubiquitin 5.	Uncharacterized protein.	0.693
A0A2G4STG9	A0A2G4T020	Polyubiquitin 5.	Uncharacterized protein.	0.463
A0A2G4STG9	A0A2G4T292	Polyubiquitin 5.	Uncharacterized protein.	0.541
A0A2G4STG9	A0A2G4T381	Polyubiquitin 5.	Uncharacterized protein.	0.693
A0A2G4SXK4	A0A2G4STG9	Uncharacterized protein.	Polyubiquitin 5.	0.693
A0A2G4SXK4	A0A2G4T9R3	Uncharacterized protein.	Uncharacterized protein.	0.693
A0A2G4T020	A0A2G4STG9	Uncharacterized protein.	Polyubiquitin 5.	0.463
A0A2G4T020	A0A2G4T9R3	Uncharacterized protein.	Uncharacterized protein.	0.463
A0A2G4T292	A0A2G4STG9	Uncharacterized protein.	Polyubiquitin 5.	0.541
A0A2G4T292	A0A2G4T9R3	Uncharacterized protein.	Uncharacterized protein.	0.463
A0A2G4T381	A0A2G4STG9	Uncharacterized protein.	Polyubiquitin 5.	0.693
A0A2G4T381	A0A2G4T9R3	Uncharacterized protein.	Uncharacterized protein.	0.693
A0A2G4T9R3	A0A2G4SXK4	Uncharacterized protein.	Uncharacterized protein.	0.693
A0A2G4T9R3	A0A2G4T020	Uncharacterized protein.	Uncharacterized protein.	0.463
A0A2G4T9R3	A0A2G4T292	Uncharacterized protein.	Uncharacterized protein.	0.463
A0A2G4T9R3	A0A2G4T381	Uncharacterized protein.	Uncharacterized protein.	0.693