(113 nodes) RNA-binding domain superfamily network (Rhizopus microsporus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2G4SHZ3	Uncharacterized protein. (386 aa)
	A0A2G4SEP3	ARM repeat-containing protein. (939 aa)
	A0A2G4SEV2	S-adenosyl-L-methionine-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (576 aa)
	A0A2G4SF46	RNA-binding domain-containing protein. (262 aa)
	A0A2G4SFG5	RNA-binding domain-containing protein. (302 aa)
	A0A2G4SFQ7	RNA-binding domain-containing protein. (511 aa)
	A0A2G4SFT4	Uncharacterized protein. (347 aa)
	A0A2G4SFV1	RNA-binding domain-containing protein. (240 aa)
	A0A2G4SGP0	Small nuclear ribonucleo protein 35. (189 aa)
	A0A2G4SHC0	Uncharacterized protein. (723 aa)
	A0A2G4SHG7	Uncharacterized protein. (406 aa)
	A0A2G4SI44	Uncharacterized protein. (838 aa)
	A0A2G4SID1	RNA-binding domain-containing protein. (157 aa)
	A0A2G4SID2	Uncharacterized protein. (181 aa)
	A0A2G4SIL1	RNA-binding domain-containing protein. (410 aa)
	A0A2G4SIP2	Uncharacterized protein. (338 aa)
	A0A2G4SJ30	Uncharacterized protein. (256 aa)
	A0A2G4SJC6	Uncharacterized protein. (532 aa)
	A0A2G4SK73	DUF4187 domain-containing protein. (360 aa)
	A0A2G4SKA4	Pre-mRNA-splicing factor SLT11. (319 aa)
	A0A2G4SKI3	RRM domain-containing protein. (244 aa)
	PRT1	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family. (731 aa)
	A0A2G4SL58	RNA-binding domain-containing protein. (725 aa)
	A0A2G4SLU6	RRM domain-containing protein. (138 aa)
	A0A2G4SLW4	RRM domain-containing protein. (649 aa)
	A0A2G4SLY5	RNA-binding domain-containing protein. (336 aa)
	A0A2G4SM95	RNA-binding domain-containing protein. (331 aa)
	A0A2G4SMF0	Uncharacterized protein. (218 aa)
	A0A2G4SMK5	Uncharacterized protein. (500 aa)
	A0A2G4SN78	Uncharacterized protein. (247 aa)
	A0A2G4SNF1	RRM domain-containing protein. (255 aa)
	A0A2G4SNF4	RNA-binding domain-containing protein. (421 aa)
	A0A2G4SNJ2	RNA-binding domain-containing protein. (289 aa)
	A0A2G4SNM8	Winged helix DNA-binding domain-containing protein. (267 aa)
	A0A2G4SNR4	Uncharacterized protein. (652 aa)
	A0A2G4SNU6	RNA-binding domain-containing protein. (307 aa)
	A0A2G4SNV6	RRM domain-containing protein. (603 aa)
	A0A2G4SP17	Uncharacterized protein. (333 aa)
	A0A2G4SP97	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (533 aa)
	A0A2G4SPL2	RNA-binding domain-containing protein. (412 aa)
	A0A2G4SQ03	Uncharacterized protein. (398 aa)
	A0A2G4SQ27	Uncharacterized protein. (422 aa)
	A0A2G4SQ45	RRM domain-containing protein. (297 aa)
	A0A2G4SQN2	Uncharacterized protein. (235 aa)
	A0A2G4SQY1	RNA-binding domain-containing protein. (363 aa)
	A0A2G4SR00	RRM domain-containing protein. (111 aa)
	A0A2G4SR40	Nuclear cap-binding protein subunit 2. (219 aa)
	A0A2G4SRP1	RNA-binding domain-containing protein. (347 aa)
	A0A2G4SRP8	Uncharacterized protein. (453 aa)
	A0A2G4SRV7	DEAD-domain-containing protein; Belongs to the DEAD box helicase family. (674 aa)
	A0A2G4SS66	ARM repeat-containing protein. (763 aa)
	A0A2G4SSE3	Uncharacterized protein. (282 aa)
	A0A2G4SSV1	RNA-binding domain-containing protein. (340 aa)
	A0A2G4ST17	RRM domain-containing protein. (148 aa)
	A0A2G4ST25	Uncharacterized protein. (222 aa)
	A0A2G4ST71	RNA-binding domain-containing protein. (208 aa)
	A0A2G4SU19	Uncharacterized protein. (438 aa)
	A0A2G4SUB8	Uncharacterized protein. (293 aa)
	A0A2G4SUD1	RNA-binding domain-containing protein. (230 aa)
	A0A2G4SUE9	Uncharacterized protein. (661 aa)
	A0A2G4SUZ2	ARM repeat-containing protein. (719 aa)
	A0A2G4SV37	Uncharacterized protein. (425 aa)
	A0A2G4SVL7	RRM domain-containing protein. (521 aa)
	A0A2G4SVY2	Uncharacterized protein. (642 aa)
	A0A2G4SW20	Uncharacterized protein. (281 aa)
	A0A2G4SW23	DnaJ-domain-containing protein. (324 aa)
	A0A2G4SW43	Uncharacterized protein. (235 aa)
	A0A2G4SWQ8	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (556 aa)
	A0A2G4SX16	S-adenosyl-L-methionine-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (487 aa)
	A0A2G4SXD1	Uncharacterized protein. (306 aa)
	A0A2G4SXD7	Splicing factor, CC1-like protein. (481 aa)
	A0A2G4SXS9	Uncharacterized protein. (360 aa)
	A0A2G4SXV3	Trs120-domain-containing protein. (1530 aa)
	A0A2G4SY26	Uncharacterized protein. (364 aa)
	A0A2G4SY63	RNA-binding domain-containing protein. (303 aa)
	A0A2G4SYV5	Uncharacterized protein. (344 aa)
	A0A2G4SZ51	Uncharacterized protein. (583 aa)
	A0A2G4SZB4	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (451 aa)
	A0A2G4SZN1	RNA-dependent RNA polymerase. (1150 aa)
	A0A2G4SZX1	RNA-binding domain-containing protein. (375 aa)
	A0A2G4SZX2	RRM domain-containing protein. (287 aa)
	A0A2G4T036	Uncharacterized protein. (601 aa)
	A0A2G4T0K6	RRM domain-containing protein. (368 aa)
	A0A2G4T0X9	Uncharacterized protein. (669 aa)
	A0A2G4T135	RNA-binding domain-containing protein. (235 aa)
	A0A2G4T1A9	Zf-UBP-domain-containing protein. (478 aa)
	A0A2G4T1D1	Splicing factor U2AF subunit. (222 aa)
	A0A2G4T1R6	RRM domain-containing protein. (341 aa)
	A0A2G4T202	RNA-binding domain-containing protein. (278 aa)
	A0A2G4T268	NTF2-domain-containing protein. (524 aa)
	A0A2G4T2J7	Uncharacterized protein. (351 aa)
	A0A2G4T2T3	RRM domain-containing protein. (246 aa)
	A0A2G4T3B0	RNA-binding domain-containing protein. (292 aa)
	A0A2G4T4I7	RNA-binding domain-containing protein. (264 aa)
	A0A2G4T4V5	RRM domain-containing protein. (92 aa)
	TIF35	Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA. (289 aa)
	A0A2G4T5A5	RNA-binding domain-containing protein. (293 aa)
	A0A2G4T5D9	RRM domain-containing protein. (167 aa)
	A0A2G4T5H0	Uncharacterized protein. (168 aa)
	A0A2G4T622	Uncharacterized protein. (154 aa)
	A0A2G4T6E8	Uncharacterized protein. (502 aa)
	A0A2G4T6J9	Uncharacterized protein. (320 aa)
	A0A2G4T714	Uncharacterized protein. (438 aa)
	A0A2G4T777	RNA-binding domain-containing protein. (119 aa)
	A0A2G4T787	RNA-binding domain-containing protein. (315 aa)
	A0A2G4T7B3	Smg4_UPF3 domain-containing protein. (96 aa)
	A0A2G4T825	Uncharacterized protein. (253 aa)
	A0A2G4T8H0	Peptidyl-prolyl cis-trans isomerase E. (314 aa)
	A0A2G4T992	RNA-binding domain-containing protein. (715 aa)
	A0A2G4T9K6	RRM domain-containing protein. (214 aa)
	A0A2G4T9K7	RRM domain-containing protein. (323 aa)
	A0A2G4T9W7	Uncharacterized protein. (357 aa)
	A0A2G4TA72	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (626 aa)

Your Current Organism:

Rhizopus microsporus

NCBI taxonomy Id: 1340429
Other names: R. microsporus ATCC 52813, Rhizopus microsporus ATCC 52813

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2G4SF46	A0A2G4SFG5	A0A2G4SF46	A0A2G4SFG5	RNA-binding domain-containing protein.	RNA-binding domain-containing protein.	0.684
A0A2G4SF46	A0A2G4SFV1	A0A2G4SF46	A0A2G4SFV1	RNA-binding domain-containing protein.	RNA-binding domain-containing protein.	0.823
A0A2G4SF46	A0A2G4SGP0	A0A2G4SF46	A0A2G4SGP0	RNA-binding domain-containing protein.	Small nuclear ribonucleo protein 35.	0.588
A0A2G4SF46	A0A2G4SHZ3	A0A2G4SF46	A0A2G4SHZ3	RNA-binding domain-containing protein.	Uncharacterized protein.	0.684
A0A2G4SF46	A0A2G4SID1	A0A2G4SF46	A0A2G4SID1	RNA-binding domain-containing protein.	RNA-binding domain-containing protein.	0.873
A0A2G4SF46	A0A2G4SIP2	A0A2G4SF46	A0A2G4SIP2	RNA-binding domain-containing protein.	Uncharacterized protein.	0.688
A0A2G4SF46	A0A2G4SLU6	A0A2G4SF46	A0A2G4SLU6	RNA-binding domain-containing protein.	RRM domain-containing protein.	0.855
A0A2G4SF46	A0A2G4SLW4	A0A2G4SF46	A0A2G4SLW4	RNA-binding domain-containing protein.	RRM domain-containing protein.	0.684
A0A2G4SF46	A0A2G4SLY5	A0A2G4SF46	A0A2G4SLY5	RNA-binding domain-containing protein.	RNA-binding domain-containing protein.	0.775
A0A2G4SF46	A0A2G4SM95	A0A2G4SF46	A0A2G4SM95	RNA-binding domain-containing protein.	RNA-binding domain-containing protein.	0.807
A0A2G4SF46	A0A2G4SMK5	A0A2G4SF46	A0A2G4SMK5	RNA-binding domain-containing protein.	Uncharacterized protein.	0.684
A0A2G4SF46	A0A2G4SN78	A0A2G4SF46	A0A2G4SN78	RNA-binding domain-containing protein.	Uncharacterized protein.	0.618
A0A2G4SF46	A0A2G4SNM8	A0A2G4SF46	A0A2G4SNM8	RNA-binding domain-containing protein.	Winged helix DNA-binding domain-containing protein.	0.684
A0A2G4SF46	A0A2G4SNU6	A0A2G4SF46	A0A2G4SNU6	RNA-binding domain-containing protein.	RNA-binding domain-containing protein.	0.733
A0A2G4SF46	A0A2G4SNV6	A0A2G4SF46	A0A2G4SNV6	RNA-binding domain-containing protein.	RRM domain-containing protein.	0.684
A0A2G4SF46	A0A2G4SP97	A0A2G4SF46	A0A2G4SP97	RNA-binding domain-containing protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.870
A0A2G4SF46	A0A2G4SQ03	A0A2G4SF46	A0A2G4SQ03	RNA-binding domain-containing protein.	Uncharacterized protein.	0.684
A0A2G4SF46	A0A2G4SQ45	A0A2G4SF46	A0A2G4SQ45	RNA-binding domain-containing protein.	RRM domain-containing protein.	0.684
A0A2G4SF46	A0A2G4SQY1	A0A2G4SF46	A0A2G4SQY1	RNA-binding domain-containing protein.	RNA-binding domain-containing protein.	0.684
A0A2G4SF46	A0A2G4SR40	A0A2G4SF46	A0A2G4SR40	RNA-binding domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.930