(5 nodes) Mixed, incl. Tricalbin, C2B domain, and Zinc-dependent metalloprotease network (Aspergillus welwitschiae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A3F3PGU2	Uncharacterized protein. (251 aa)
	A0A3F3PNV1	FAD-binding PCMH-type domain-containing protein; Belongs to the oxygen-dependent FAD-linked oxidoreductase family. (500 aa)
	A0A3F3Q044	PAF acetylhydrolase family protein. (402 aa)
	A0A3F3Q781	Metalloprotease. (518 aa)
	A0A3F3QKA7	Uncharacterized protein. (1237 aa)

Your Current Organism:

Aspergillus welwitschiae

NCBI taxonomy Id: 1341132
Other names: A. welwitschiae, Aspergillus welwitschiae (Bres.) Henn., CBS 139.54, Ustilago welwitschiae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A3F3PGU2	A0A3F3PNV1	Uncharacterized protein.	FAD-binding PCMH-type domain-containing protein; Belongs to the oxygen-dependent FAD-linked oxidoreductase family.	0.651
A0A3F3PGU2	A0A3F3Q044	Uncharacterized protein.	PAF acetylhydrolase family protein.	0.708
A0A3F3PGU2	A0A3F3Q781	Uncharacterized protein.	Metalloprotease.	0.634
A0A3F3PGU2	A0A3F3QKA7	Uncharacterized protein.	Uncharacterized protein.	0.585
A0A3F3PNV1	A0A3F3PGU2	FAD-binding PCMH-type domain-containing protein; Belongs to the oxygen-dependent FAD-linked oxidoreductase family.	Uncharacterized protein.	0.651
A0A3F3PNV1	A0A3F3Q781	FAD-binding PCMH-type domain-containing protein; Belongs to the oxygen-dependent FAD-linked oxidoreductase family.	Metalloprotease.	0.703
A0A3F3PNV1	A0A3F3QKA7	FAD-binding PCMH-type domain-containing protein; Belongs to the oxygen-dependent FAD-linked oxidoreductase family.	Uncharacterized protein.	0.582
A0A3F3Q044	A0A3F3PGU2	PAF acetylhydrolase family protein.	Uncharacterized protein.	0.708
A0A3F3Q044	A0A3F3Q781	PAF acetylhydrolase family protein.	Metalloprotease.	0.635
A0A3F3Q044	A0A3F3QKA7	PAF acetylhydrolase family protein.	Uncharacterized protein.	0.601
A0A3F3Q781	A0A3F3PGU2	Metalloprotease.	Uncharacterized protein.	0.634
A0A3F3Q781	A0A3F3PNV1	Metalloprotease.	FAD-binding PCMH-type domain-containing protein; Belongs to the oxygen-dependent FAD-linked oxidoreductase family.	0.703
A0A3F3Q781	A0A3F3Q044	Metalloprotease.	PAF acetylhydrolase family protein.	0.635
A0A3F3QKA7	A0A3F3PGU2	Uncharacterized protein.	Uncharacterized protein.	0.585
A0A3F3QKA7	A0A3F3PNV1	Uncharacterized protein.	FAD-binding PCMH-type domain-containing protein; Belongs to the oxygen-dependent FAD-linked oxidoreductase family.	0.582
A0A3F3QKA7	A0A3F3Q044	Uncharacterized protein.	PAF acetylhydrolase family protein.	0.601