44 items (Aspergillus welwitschiae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A3F3PKL2	Utp21 specific WD40 associated putative domain-domain-containing protein. (1035 aa)
	A0A3F3PLI3	U3 small nucleolar RNA-associated protein 22. (1116 aa)
	A0A3F3PMI6	Nucleolar protein 14. (920 aa)
	NAT10	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1068 aa)
	A0A3F3PR28	Dip2/Utp12 family-domain-containing protein. (849 aa)
	A0A3F3PSV7	WD40-repeat-containing domain protein. (609 aa)
	A0A3F3PT32	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (124 aa)
	A0A3F3PTH1	CBF/Mak21 family-domain-containing protein. (549 aa)
	A0A3F3PUM3	Ribosome biogenesis protein. (1180 aa)
	A0A3F3PW25	Uncharacterized protein. (1821 aa)
	A0A3F3PX50	Alpha/beta knot methyltransferase. (254 aa)
	A0A3F3PXB0	Sas10/Utp3/C1D family-domain-containing protein. (388 aa)
	A0A3F3PY01	18S rRNA biogenesis protein. (405 aa)
	A0A3F3PY18	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (364 aa)
	A0A3F3PYG0	Small nucleolar ribonucleo protein complex subunit. (479 aa)
	A0A3F3PZ46	Small nucleolar ribonucleo protein complex subunit. (535 aa)
	A0A3F3Q0P7	WD40 repeat-like protein. (903 aa)
	A0A3F3Q1V6	Small-subunit processome. (297 aa)
	A0A3F3Q258	Fibrillarin-domain-containing protein. (313 aa)
	A0A3F3Q270	Utp14-domain-containing protein. (973 aa)
	A0A3F3Q4K4	WD40-repeat-containing domain protein. (622 aa)
	A0A3F3Q4L4	Small nucleolar ribonucleo protein complex subunit. (976 aa)
	A0A3F3Q5H5	Nucleolar protein 58. (580 aa)
	A0A3F3Q5V8	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (712 aa)
	A0A3F3Q5Y4	Putative pre-rRNA processing nucleolar protein Sik1. (519 aa)
	A0A3F3Q5Z5	U3 small nucleolar RNA-associated protein 6-domain-containing protein. (393 aa)
	A0A3F3Q7Z2	Uncharacterized protein. (295 aa)
	A0A3F3Q8K4	P-loop containing nucleoside triphosphate hydrolase protein. (827 aa)
	A0A3F3Q8Q4	S4 RNA-binding domain-containing protein. (188 aa)
	A0A3F3Q976	Quinon protein alcohol dehydrogenase-like superfamily. (927 aa)
	A0A3F3QAD2	Ribosomal RNA-processing protein 7-domain-containing protein. (306 aa)
	A0A3F3QAD9	WD repeat protein. (728 aa)
	A0A3F3QAV9	Protein bfr2. (558 aa)
	A0A3F3QBS0	Armadillo-type protein. (2610 aa)
	A0A3F3QDP8	Fcf2 pre-rRNA processing-domain-containing protein. (240 aa)
	A0A3F3QDU6	P-loop containing nucleoside triphosphate hydrolase protein. (1199 aa)
	A0A3F3QEX9	WD_REPEATS_REGION domain-containing protein. (962 aa)
	A0A3F3QFH1	Fcf1-domain-containing protein. (506 aa)
	A0A3F3QGS9	Sialidase. (377 aa)
	A0A3F3QHA4	U3 small nucleolar RNA-associated protein 10. (1800 aa)
	A0A3F3QHL2	Brix-domain-containing protein. (297 aa)
	A0A3F3QHR7	Sas10 C-terminal domain-domain-containing protein. (653 aa)
	A0A3F3QJ25	Small nucleolar ribonucleo protein complex subunit. (955 aa)
	A0A3F3QJH0	WD40 repeat-like protein. (541 aa)

Your Current Organism:

Aspergillus welwitschiae

NCBI taxonomy Id: 1341132
Other names: A. welwitschiae, Aspergillus welwitschiae (Bres.) Henn., CBS 139.54, Ustilago welwitschiae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A3F3PKL2	A0A3F3PLI3	A0A3F3PKL2	A0A3F3PLI3	Utp21 specific WD40 associated putative domain-domain-containing protein.	U3 small nucleolar RNA-associated protein 22.	0.999
A0A3F3PKL2	A0A3F3PMI6	A0A3F3PKL2	A0A3F3PMI6	Utp21 specific WD40 associated putative domain-domain-containing protein.	Nucleolar protein 14.	0.992
A0A3F3PKL2	A0A3F3PR28	A0A3F3PKL2	A0A3F3PR28	Utp21 specific WD40 associated putative domain-domain-containing protein.	Dip2/Utp12 family-domain-containing protein.	0.999
A0A3F3PKL2	A0A3F3PSV7	A0A3F3PKL2	A0A3F3PSV7	Utp21 specific WD40 associated putative domain-domain-containing protein.	WD40-repeat-containing domain protein.	0.999
A0A3F3PKL2	A0A3F3PT32	A0A3F3PKL2	A0A3F3PT32	Utp21 specific WD40 associated putative domain-domain-containing protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.974
A0A3F3PKL2	A0A3F3PTH1	A0A3F3PKL2	A0A3F3PTH1	Utp21 specific WD40 associated putative domain-domain-containing protein.	CBF/Mak21 family-domain-containing protein.	0.994
A0A3F3PKL2	A0A3F3PUM3	A0A3F3PKL2	A0A3F3PUM3	Utp21 specific WD40 associated putative domain-domain-containing protein.	Ribosome biogenesis protein.	0.997
A0A3F3PKL2	A0A3F3PW25	A0A3F3PKL2	A0A3F3PW25	Utp21 specific WD40 associated putative domain-domain-containing protein.	Uncharacterized protein.	0.992
A0A3F3PKL2	A0A3F3PX50	A0A3F3PKL2	A0A3F3PX50	Utp21 specific WD40 associated putative domain-domain-containing protein.	Alpha/beta knot methyltransferase.	0.976
A0A3F3PKL2	A0A3F3PXB0	A0A3F3PKL2	A0A3F3PXB0	Utp21 specific WD40 associated putative domain-domain-containing protein.	Sas10/Utp3/C1D family-domain-containing protein.	0.990
A0A3F3PKL2	A0A3F3PY01	A0A3F3PKL2	A0A3F3PY01	Utp21 specific WD40 associated putative domain-domain-containing protein.	18S rRNA biogenesis protein.	0.992
A0A3F3PKL2	A0A3F3PY18	A0A3F3PKL2	A0A3F3PY18	Utp21 specific WD40 associated putative domain-domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.995
A0A3F3PKL2	A0A3F3PYG0	A0A3F3PKL2	A0A3F3PYG0	Utp21 specific WD40 associated putative domain-domain-containing protein.	Small nucleolar ribonucleo protein complex subunit.	0.993
A0A3F3PKL2	A0A3F3PZ46	A0A3F3PKL2	A0A3F3PZ46	Utp21 specific WD40 associated putative domain-domain-containing protein.	Small nucleolar ribonucleo protein complex subunit.	0.997
A0A3F3PKL2	A0A3F3Q0P7	A0A3F3PKL2	A0A3F3Q0P7	Utp21 specific WD40 associated putative domain-domain-containing protein.	WD40 repeat-like protein.	0.999
A0A3F3PKL2	A0A3F3Q1V6	A0A3F3PKL2	A0A3F3Q1V6	Utp21 specific WD40 associated putative domain-domain-containing protein.	Small-subunit processome.	0.988
A0A3F3PKL2	A0A3F3Q258	A0A3F3PKL2	A0A3F3Q258	Utp21 specific WD40 associated putative domain-domain-containing protein.	Fibrillarin-domain-containing protein.	0.993
A0A3F3PKL2	A0A3F3Q270	A0A3F3PKL2	A0A3F3Q270	Utp21 specific WD40 associated putative domain-domain-containing protein.	Utp14-domain-containing protein.	0.996
A0A3F3PKL2	A0A3F3Q4K4	A0A3F3PKL2	A0A3F3Q4K4	Utp21 specific WD40 associated putative domain-domain-containing protein.	WD40-repeat-containing domain protein.	0.995
A0A3F3PKL2	A0A3F3Q4L4	A0A3F3PKL2	A0A3F3Q4L4	Utp21 specific WD40 associated putative domain-domain-containing protein.	Small nucleolar ribonucleo protein complex subunit.	0.999