(6 nodes) TIM23 mitochondrial import inner membrane translocase complex network (Aspergillus welwitschiae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A3F3PQ65	Protein transporter. (135 aa)
	A0A3F3PZ36	Tim17/Tim22/Tim23/Pmp24 family-domain-containing protein. (202 aa)
	A0A3F3Q594	TIM21-domain-containing protein. (244 aa)
	A0A3F3QBU7	Tim17/Tim22/Tim23/Pmp24 family-domain-containing protein. (154 aa)
	A0A3F3QJP9	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. (517 aa)
	A0A3F3QJV5	Uncharacterized protein. (104 aa)

Your Current Organism:

Aspergillus welwitschiae

NCBI taxonomy Id: 1341132
Other names: A. welwitschiae, Aspergillus welwitschiae (Bres.) Henn., CBS 139.54, Ustilago welwitschiae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A3F3PQ65	A0A3F3PZ36	Protein transporter.	Tim17/Tim22/Tim23/Pmp24 family-domain-containing protein.	0.969
A0A3F3PQ65	A0A3F3Q594	Protein transporter.	TIM21-domain-containing protein.	0.863
A0A3F3PQ65	A0A3F3QBU7	Protein transporter.	Tim17/Tim22/Tim23/Pmp24 family-domain-containing protein.	0.965
A0A3F3PQ65	A0A3F3QJP9	Protein transporter.	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	0.923
A0A3F3PQ65	A0A3F3QJV5	Protein transporter.	Uncharacterized protein.	0.988
A0A3F3PZ36	A0A3F3PQ65	Tim17/Tim22/Tim23/Pmp24 family-domain-containing protein.	Protein transporter.	0.969
A0A3F3PZ36	A0A3F3Q594	Tim17/Tim22/Tim23/Pmp24 family-domain-containing protein.	TIM21-domain-containing protein.	0.981
A0A3F3PZ36	A0A3F3QBU7	Tim17/Tim22/Tim23/Pmp24 family-domain-containing protein.	Tim17/Tim22/Tim23/Pmp24 family-domain-containing protein.	0.992
A0A3F3PZ36	A0A3F3QJP9	Tim17/Tim22/Tim23/Pmp24 family-domain-containing protein.	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	0.989
A0A3F3PZ36	A0A3F3QJV5	Tim17/Tim22/Tim23/Pmp24 family-domain-containing protein.	Uncharacterized protein.	0.970
A0A3F3Q594	A0A3F3PQ65	TIM21-domain-containing protein.	Protein transporter.	0.863
A0A3F3Q594	A0A3F3PZ36	TIM21-domain-containing protein.	Tim17/Tim22/Tim23/Pmp24 family-domain-containing protein.	0.981
A0A3F3Q594	A0A3F3QBU7	TIM21-domain-containing protein.	Tim17/Tim22/Tim23/Pmp24 family-domain-containing protein.	0.942
A0A3F3Q594	A0A3F3QJP9	TIM21-domain-containing protein.	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	0.973
A0A3F3Q594	A0A3F3QJV5	TIM21-domain-containing protein.	Uncharacterized protein.	0.852
A0A3F3QBU7	A0A3F3PQ65	Tim17/Tim22/Tim23/Pmp24 family-domain-containing protein.	Protein transporter.	0.965
A0A3F3QBU7	A0A3F3PZ36	Tim17/Tim22/Tim23/Pmp24 family-domain-containing protein.	Tim17/Tim22/Tim23/Pmp24 family-domain-containing protein.	0.992
A0A3F3QBU7	A0A3F3Q594	Tim17/Tim22/Tim23/Pmp24 family-domain-containing protein.	TIM21-domain-containing protein.	0.942
A0A3F3QBU7	A0A3F3QJP9	Tim17/Tim22/Tim23/Pmp24 family-domain-containing protein.	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	0.979
A0A3F3QBU7	A0A3F3QJV5	Tim17/Tim22/Tim23/Pmp24 family-domain-containing protein.	Uncharacterized protein.	0.911