(6 nodes) Oxysterol-binding protein, and Anoctamin network (Aspergillus welwitschiae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A3F3PHH3	Oxysterol-binding protein-domain-containing protein. (970 aa)
	A0A3F3Q3J5	Uncharacterized protein; Belongs to the OSBP family. (415 aa)
	A0A3F3Q637	VAMP-associated protein. (286 aa)
	A0A3F3Q9D4	Uncharacterized protein. (74 aa)
	A0A3F3QFR1	Calcium-activated chloride channel-domain-containing protein. (737 aa)
	A0A3F3QJ89	Uncharacterized protein; Belongs to the OSBP family. (475 aa)

Your Current Organism:

Aspergillus welwitschiae

NCBI taxonomy Id: 1341132
Other names: A. welwitschiae, Aspergillus welwitschiae (Bres.) Henn., CBS 139.54, Ustilago welwitschiae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A3F3PHH3	A0A3F3Q3J5	Oxysterol-binding protein-domain-containing protein.	Uncharacterized protein; Belongs to the OSBP family.	0.594
A0A3F3PHH3	A0A3F3Q637	Oxysterol-binding protein-domain-containing protein.	VAMP-associated protein.	0.967
A0A3F3PHH3	A0A3F3Q9D4	Oxysterol-binding protein-domain-containing protein.	Uncharacterized protein.	0.535
A0A3F3Q3J5	A0A3F3PHH3	Uncharacterized protein; Belongs to the OSBP family.	Oxysterol-binding protein-domain-containing protein.	0.594
A0A3F3Q3J5	A0A3F3Q637	Uncharacterized protein; Belongs to the OSBP family.	VAMP-associated protein.	0.530
A0A3F3Q3J5	A0A3F3Q9D4	Uncharacterized protein; Belongs to the OSBP family.	Uncharacterized protein.	0.571
A0A3F3Q3J5	A0A3F3QFR1	Uncharacterized protein; Belongs to the OSBP family.	Calcium-activated chloride channel-domain-containing protein.	0.404
A0A3F3Q637	A0A3F3PHH3	VAMP-associated protein.	Oxysterol-binding protein-domain-containing protein.	0.967
A0A3F3Q637	A0A3F3Q3J5	VAMP-associated protein.	Uncharacterized protein; Belongs to the OSBP family.	0.530
A0A3F3Q637	A0A3F3Q9D4	VAMP-associated protein.	Uncharacterized protein.	0.969
A0A3F3Q637	A0A3F3QJ89	VAMP-associated protein.	Uncharacterized protein; Belongs to the OSBP family.	0.617
A0A3F3Q9D4	A0A3F3PHH3	Uncharacterized protein.	Oxysterol-binding protein-domain-containing protein.	0.535
A0A3F3Q9D4	A0A3F3Q3J5	Uncharacterized protein.	Uncharacterized protein; Belongs to the OSBP family.	0.571
A0A3F3Q9D4	A0A3F3Q637	Uncharacterized protein.	VAMP-associated protein.	0.969
A0A3F3Q9D4	A0A3F3QJ89	Uncharacterized protein.	Uncharacterized protein; Belongs to the OSBP family.	0.578
A0A3F3QFR1	A0A3F3Q3J5	Calcium-activated chloride channel-domain-containing protein.	Uncharacterized protein; Belongs to the OSBP family.	0.404
A0A3F3QFR1	A0A3F3QJ89	Calcium-activated chloride channel-domain-containing protein.	Uncharacterized protein; Belongs to the OSBP family.	0.647
A0A3F3QJ89	A0A3F3Q637	Uncharacterized protein; Belongs to the OSBP family.	VAMP-associated protein.	0.617
A0A3F3QJ89	A0A3F3Q9D4	Uncharacterized protein; Belongs to the OSBP family.	Uncharacterized protein.	0.578
A0A3F3QJ89	A0A3F3QFR1	Uncharacterized protein; Belongs to the OSBP family.	Calcium-activated chloride channel-domain-containing protein.	0.647