STRINGSTRING
USB1 USB1 A0A3F3QE81 A0A3F3QE81 A0A3F3QHQ8 A0A3F3QHQ8 A0A3F3QJI2 A0A3F3QJI2 A0A3F3Q9B1 A0A3F3Q9B1 A0A3F3Q7A4 A0A3F3Q7A4 A0A3F3Q658 A0A3F3Q658 A0A3F3Q517 A0A3F3Q517 A0A3F3Q4F7 A0A3F3Q4F7 A0A3F3QCR7 A0A3F3QCR7 A0A3F3QD89 A0A3F3QD89 A0A3F3PNZ9 A0A3F3PNZ9 PAN2 PAN2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
USB1U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family. (300 aa)
A0A3F3QE81Exonuclease domain-containing protein. (802 aa)
A0A3F3QHQ8RNB domain-containing protein. (1372 aa)
A0A3F3QJI2Uncharacterized protein. (501 aa)
A0A3F3Q9B1RNB domain-containing protein. (1052 aa)
A0A3F3Q7A4Ribonuclease H-like domain-containing protein. (488 aa)
A0A3F3Q658Exosome complex exonuclease Rrp6. (782 aa)
A0A3F3Q517Ribonuclease H-like domain-containing protein. (172 aa)
A0A3F3Q4F7Endonuclease/exonuclease/phosphatase. (298 aa)
A0A3F3QCR7Mitotic control protein Dis3; Belongs to the RNR ribonuclease family. (1033 aa)
A0A3F3QD89Glucose-repressible alcohol dehydrogenase transcriptional effector. (681 aa)
A0A3F3PNZ9Ribonuclease H-like domain-containing protein. (458 aa)
PAN2PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...] (1155 aa)
Your Current Organism:
Aspergillus welwitschiae
NCBI taxonomy Id: 1341132
Other names: A. welwitschiae, Aspergillus welwitschiae (Bres.) Henn., CBS 139.54, Ustilago welwitschiae
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